RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RHOBTB2Q9BYZ6 727 aa8.78□□□□□ -1
VPS53-214ENST00000572607 SCAND2PQ9GZW5 306 aaPredicted RBP8.78□□□□□ -1
VPS53-214ENST00000572607 USP25Q9UHP3 1055 aa8.78□□□□□ -1
VPS53-214ENST00000572607 CDH22Q9UJ99 828 aa8.78□□□□□ -1
VPS53-214ENST00000572607 FBXW11Q9UKB1 542 aa8.78□□□□□ -1
VPS53-214ENST00000572607 USTQ9Y2C2 406 aa8.78□□□□□ -1
VPS53-214ENST00000572607 R3HCC1Q9Y3T6 440 aaKnown RBP8.78□□□□□ -1
VPS53-214ENST00000572607 C2CD2Q9Y426 696 aa8.78□□□□□ -1
VPS53-214ENST00000572607 ZFHX2Q9C0A1 2572 aaPredicted RBP8.78□□□□□ -1
VPS53-214ENST00000572607 UBE4BO95155 1302 aa8.78□□□□□ -1
VPS53-214ENST00000572607 MYO10Q9HD67 2058 aa8.77□□□□□ -1
VPS53-214ENST00000572607 C2CD4DB7Z1M9 353 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 TISP43B9A030 160 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 MEFVO15553 781 aaPredicted RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 EXTL3O43909 919 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 FAM189A1O60320 539 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 RFPL2O75678 378 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 PRPF6O94906 941 aaKnown RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 NFICP08651 508 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 HNRNPA1P09651 372 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS53-214ENST00000572607 ODC1P11926 461 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 FECHP22830 423 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 GBP2P32456 591 aaPredicted RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 AFMP43652 599 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 RPIAP49247 311 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 VCPP55072 806 aaKnown RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 ARPP19P56211 112 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 NUCB2P80303 420 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 PTPN21Q16825 1174 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 CTXN3Q4LDR2 81 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 FAM26FQ5R3K3 315 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 SPATA1Q5VX52 437 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 JADE1Q6IE81 842 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 CNNM4Q6P4Q7 775 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 LILRA6Q6PI73 481 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 RTL10Q7L3V2 364 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 ZDHHC14Q8IZN3 488 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 CACTINQ8WUQ7 758 aaKnown RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 CCDC47Q96A33 483 aaKnown RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 SAAL1Q96ER3 474 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 FAM213AQ9BRX8 229 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 STRA6Q9BX79 667 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 BLZF1Q9H2G9 400 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 RBAKQ9NYW8 714 aaPredicted RBP8.77□□□□□ -1.01
VPS53-214ENST00000572607 POLIQ9UNA4 740 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 DMXL1Q9Y485 3027 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 CLUHO75153 1309 aa8.77□□□□□ -1.01
VPS53-214ENST00000572607 A0A1B0GVL5 298 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 PVALEFA0A1B0GWK0 134 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 GOLGA6L4A6NEF3 574 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 TMEM221A6NGB7 291 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 M0R296 226 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 PRRG1O14668 218 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 EIF3DO15371 548 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS53-214ENST00000572607 LRG1P02750 347 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 MYL1P05976 194 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 ADRB2P07550 413 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SLFN14P0C7P3 912 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 CPB1P15086 417 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 PFKFB1P16118 471 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 CMA1P23946 247 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 HOXA9P31269 272 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SYKP43405 635 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 TAF6P49848 677 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 GUCY2FP51841 1108 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 CASP5P51878 434 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 TFAMQ00059 246 aaKnown RBP8.76□□□□□ -1.01
VPS53-214ENST00000572607 YWHAHQ04917 246 aaPredicted RBP8.76□□□□□ -1.01
VPS53-214ENST00000572607 KCNA1Q09470 495 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 MTMR3Q13615 1198 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SURF1Q15526 300 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 ZBTB6Q15916 424 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 UVSSAQ2YD98 709 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 C9orf57Q5W0N0 161 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SLC8B1Q6J4K2 584 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 CD300LGQ6UXG3 332 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 GET4Q7L5D6 327 aaPredicted RBP8.76□□□□□ -1.01
VPS53-214ENST00000572607 HS2ST1Q7LGA3 356 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 METTL23Q86XA0 190 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 BRSK2Q8IWQ3 736 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 GPD1LQ8N335 351 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 ZNF461Q8TAF7 563 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SLC7A14Q8TBB6 771 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 HPS3Q969F9 1004 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 THAP11Q96EK4 314 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 ASIC4Q96FT7 647 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 MFSD14AQ96MC6 490 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 ZNF560Q96MR9 790 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 PCIF1Q9H4Z3 704 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 CYP4F11Q9HBI6 524 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 KIAA1586Q9HCI6 787 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 WDR6Q9NNW5 1121 aaKnown RBP8.76□□□□□ -1.01
VPS53-214ENST00000572607 EXOC1Q9NV70 894 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 FAM86C1Q9NVL1 165 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 DPP3Q9NY33 737 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SERTAD1Q9UHV2 236 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 FBXL5Q9UKA1 691 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 SORCS3Q9UPU3 1222 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 ZDHHC9Q9Y397 364 aa8.76□□□□□ -1.01
VPS53-214ENST00000572607 MYH11P35749 1972 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms