RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DNERQ8NFT8 737 aa24.14■■□□□ 1.46
VPS53-211ENST00000571805 GSTTP1A0A1W2PQM5 241 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 TCRBV5S1A1TA0A578 114 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 ADCY3O60266 1144 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 CYB5D1Q6P9G0 228 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 SEPT14Q6ZU15 432 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 RCOR2Q8IZ40 523 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 KLHL11Q9NVR0 708 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.14■■□□□ 1.45
VPS53-211ENST00000571805 SLC12A4Q9UP95 1085 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 NAALADL1Q9UQQ1 740 aa24.14■■□□□ 1.45
VPS53-211ENST00000571805 PI4K2BG5E9Z4 385 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 LIASO43766 372 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 FAM189A1O60320 539 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 ASS1P00966 412 aaKnown RBP24.13■■□□□ 1.45
VPS53-211ENST00000571805 KRT10P13645 584 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 RFC5P40937 340 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 DYDC1Q8WWB3 177 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 C9orf72Q96LT7 481 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 SLITRK1Q96PX8 696 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 EURLQ9NYK6 297 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 GJA3Q9Y6H8 435 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 TCP11X1B4DZS4 312 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 HARSP12081 509 aaKnown RBP24.13■■□□□ 1.45
VPS53-211ENST00000571805 TNFSF9P41273 254 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 P3H1Q32P28 736 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 TRPM8Q7Z2W7 1104 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 BRSK2Q8IWQ3 736 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 ZCCHC9Q8N567 271 aaKnown RBP24.13■■□□□ 1.45
VPS53-211ENST00000571805 SLC16A10Q8TF71 515 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 CKAP2Q8WWK9 683 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 SGSM3Q96HU1 749 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 KCNK9Q9NPC2 374 aa24.13■■□□□ 1.45
VPS53-211ENST00000571805 GSTA1P08263 222 aa24.12■■□□□ 1.45
VPS53-211ENST00000571805 BRAFP15056 766 aa24.12■■□□□ 1.45
VPS53-211ENST00000571805 GSTA5Q7RTV2 222 aa24.12■■□□□ 1.45
VPS53-211ENST00000571805 GLIS1Q8NBF1 620 aa24.12■■□□□ 1.45
VPS53-211ENST00000571805 KLRG1Q96E93 195 aa24.12■■□□□ 1.45
VPS53-211ENST00000571805 FHDC1Q9C0D6 1143 aaPredicted RBP24.12■■□□□ 1.45
VPS53-211ENST00000571805 DNPEPQ9ULA0 475 aa24.12■■□□□ 1.45
VPS53-211ENST00000571805 CDH16O75309 829 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 NF2P35240 595 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 LMNB2Q03252 620 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 STAT4Q14765 748 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 DRICH1Q6PGQ1 229 aaPredicted RBP24.11■■□□□ 1.45
VPS53-211ENST00000571805 MFSD7Q6UXD7 560 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 ZPBP2Q6X784 338 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 RBM41Q96IZ5 413 aaKnown RBP24.11■■□□□ 1.45
VPS53-211ENST00000571805 FOXP3Q9BZS1 431 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 IVNS1ABPQ9Y6Y0 642 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 GH1P01241 217 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 UBA1P22314 1058 aaKnown RBP24.11■■□□□ 1.45
VPS53-211ENST00000571805 CETN2P41208 172 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 MAGEA4P43358 317 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 ANKRD42Q8N9B4 389 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 RBM15Q96T37 977 aaKnown RBP eCLIP24.11■■□□□ 1.45
VPS53-211ENST00000571805 MLXIPLQ9NP71 852 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 FGFR1OP2Q9NVK5 253 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 AFG3L2Q9Y4W6 797 aa24.11■■□□□ 1.45
VPS53-211ENST00000571805 FARP2O94887 1054 aaPredicted RBP24.1■■□□□ 1.45
VPS53-211ENST00000571805 AP3M2P53677 418 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 OGDHQ02218 1023 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 TMEM63BQ5T3F8 832 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 LRRC38Q5VT99 294 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 ANGEL2Q5VTE6 544 aaKnown RBP24.1■■□□□ 1.45
VPS53-211ENST00000571805 KAZNQ674X7 775 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 WDR49Q8IV35 697 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 PARP9Q8IXQ6 854 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 CHST13Q8NET6 341 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 IMPG2Q9BZV3 1241 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 NRBP2Q9NSY0 501 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 TBK1Q9UHD2 729 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 F8VP50 259 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 MSCO60682 206 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 CALB1P05937 261 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 ABHD2P08910 425 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 ALDH5A1P51649 535 aaPredicted RBP24.1■■□□□ 1.45
VPS53-211ENST00000571805 GRM1Q13255 1194 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 ABCF3Q9NUQ8 709 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 USP15Q9Y4E8 981 aaPredicted RBP24.1■■□□□ 1.45
VPS53-211ENST00000571805 CD2APQ9Y5K6 639 aa24.1■■□□□ 1.45
VPS53-211ENST00000571805 DNALI1O14645 258 aaPredicted RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 MAFO75444 373 aaPredicted RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 LSM8O95777 96 aaKnown RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 MYL6P60660 151 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 MCL1Q07820 350 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 PPP1R15BQ5SWA1 713 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 ANKRD35Q8N283 1001 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 WDTC1Q8N5D0 677 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 PRPF31Q8WWY3 499 aaKnown RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 CCDC77Q9BR77 488 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 CD248Q9HCU0 757 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 BRCA1P38398 1863 aaKnown RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 TJP3O95049 919 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 KRT1P04264 644 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 ZSCAN5DPP0CG00 497 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 BRD2P25440 801 aaKnown RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 EAPPQ56P03 285 aaPredicted RBP24.09■■□□□ 1.45
VPS53-211ENST00000571805 TXNRD3NBQ6F5E7 133 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 SPOCD1Q6ZMY3 1216 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms