RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 GDAP2Q9NXN4 497 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 ITGA11Q9UKX5 1188 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 AGAP1Q9UPQ3 857 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 MYH10P35580 1976 aa10.63□□□□□ -0.71
CLN3-220ENST00000566040 TECTAO75443 2155 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 EXOC3O60645 756 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 GLUD1P00367 558 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 ADH1AP07327 375 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 DLATP10515 647 aaKnown RBP10.62□□□□□ -0.71
CLN3-220ENST00000566040 CCNE1P24864 410 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 KLRC2P26717 231 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 TAF6P49848 677 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 SOWAHAQ2M3V2 549 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 ZACNQ401N2 412 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 RARS2Q5T160 578 aaKnown RBP10.62□□□□□ -0.71
CLN3-220ENST00000566040 ANKS3Q6ZW76 656 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 IRF2BP1Q8IU81 584 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 PDCL2Q8N4E4 241 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 CMASQ8NFW8 434 aaPredicted RBP10.62□□□□□ -0.71
CLN3-220ENST00000566040 TMC2Q8TDI7 906 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 CASP10Q92851 521 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 EMILIN2Q9BXX0 1053 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 SDCBP2Q9H190 292 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 ADAM7Q9H2U9 754 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 DZANK1Q9NVP4 752 aa10.62□□□□□ -0.71
CLN3-220ENST00000566040 KMT2EQ8IZD2 1858 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 KPNA7A9QM74 516 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 GABRDO14764 452 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 XPOTO43592 962 aaKnown RBP10.61□□□□□ -0.71
CLN3-220ENST00000566040 ZMYND10O75800 440 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 SMC2O95347 1197 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 STAU1O95793 577 aaKnown RBP10.61□□□□□ -0.71
CLN3-220ENST00000566040 CA8P35219 290 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 CDR1P51861 262 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 MYL6P60660 151 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 BFSP1Q12934 665 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 CBX2Q14781 532 aaPredicted RBP10.61□□□□□ -0.71
CLN3-220ENST00000566040 DPCR1Q3MIW9 517 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 KIAA1841Q6NSI8 718 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 FOXR2Q6PJQ5 311 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 TMC5Q6UXY8 1006 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 RNF19BQ6ZMZ0 732 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 EP400NLQ6ZTU2 488 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 SV2AQ7L0J3 742 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 GPR149Q86SP6 731 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 KREMEN2Q8NCW0 462 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 PPP2R3CQ969Q6 453 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 LPIN3Q9BQK8 851 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 RHOBTB2Q9BYZ6 727 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 DNAJC25Q9H1X3 360 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 VRTNQ9H8Y1 702 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 SFXN1Q9H9B4 322 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 APOBEC3GQ9HC16 384 aaKnown RBP10.61□□□□□ -0.71
CLN3-220ENST00000566040 TMEM30AQ9NV96 361 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 RMND1Q9NWS8 449 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 POLIQ9UNA4 740 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 SSX2IPQ9Y2D8 614 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 NUB1Q9Y5A7 615 aa10.61□□□□□ -0.71
CLN3-220ENST00000566040 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.61□□□□□ -0.71
CLN3-220ENST00000566040 ARHGEF37A1IGU5 675 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 FSD2A1L4K1 749 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 MTMR11A4FU01 709 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 LOC730098B7Z3J9 87 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CYB561D2O14569 222 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 TRAPPC3O43617 180 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CALUO43852 315 aaPredicted RBP10.6□□□□□ -0.71
CLN3-220ENST00000566040 TMEM191BP0C7N4 346 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 HOXB8P17481 243 aaPredicted RBP10.6□□□□□ -0.71
CLN3-220ENST00000566040 NTHL1P78549 312 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 YWHAHQ04917 246 aaPredicted RBP10.6□□□□□ -0.71
CLN3-220ENST00000566040 ENPEPQ07075 957 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 ADAM9Q13443 819 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 SURF1Q15526 300 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 DUOXA2Q1HG44 320 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 SV2CQ496J9 727 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CTXN3Q4LDR2 81 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CBWD6Q4V339 395 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CBWD3Q5JTY5 395 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CBWD5Q5RIA9 395 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CEP135Q66GS9 1140 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 OVOS1Q6IE37 1185 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 ZNF280DQ6N043 979 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 PPFIBP1Q86W92 1011 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 FAM186BQ8IYM0 893 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 TCEAL8Q8IYN2 117 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CSGALNACT2Q8N6G5 542 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 ZNF461Q8TAF7 563 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 HDAC7Q8WUI4 952 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 NELFBQ8WX92 580 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 SEMA4DQ92854 862 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 SLC35C1Q96A29 364 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 MRPL45Q9BRJ2 306 aaKnown RBP10.6□□□□□ -0.71
CLN3-220ENST00000566040 MKNK1Q9BUB5 465 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 LRRC3Q9BY71 257 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 ZCWPW1Q9H0M4 648 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 SMYD3Q9H7B4 428 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CRTAC1Q9NQ79 661 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 HCFC1R1Q9NWW0 138 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 TMEM63CQ9P1W3 806 aa10.6□□□□□ -0.71
CLN3-220ENST00000566040 CTNND2Q9UQB3 1225 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms