RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 AVENQ9NQS1 362 aaPredicted RBP22.41■■□□□ 1.18
CLN3-219ENST00000565778 GDE1Q9NZC3 331 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 RCOR1Q9UKL0 485 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 DSEQ9UL01 958 aa22.41■■□□□ 1.18
CLN3-219ENST00000565778 DOCK6Q96HP0 2047 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.4■■□□□ 1.18
CLN3-219ENST00000565778 EXTL3O43909 919 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 HOXD11P31277 338 aaPredicted RBP22.4■■□□□ 1.18
CLN3-219ENST00000565778 GPC5P78333 572 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 TCF15Q12870 199 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 ALYREFQ86V81 257 aaKnown RBP22.4■■□□□ 1.18
CLN3-219ENST00000565778 BRSK2Q8IWQ3 736 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 HS6ST3Q8IZP7 471 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 THEM5Q8N1Q8 247 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 GLIS3Q8NEA6 775 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 CEP72Q9P209 647 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 SLC27A5Q9Y2P5 690 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 ZNF318Q5VUA4 2279 aa22.4■■□□□ 1.18
CLN3-219ENST00000565778 WDFY4Q6ZS81 3184 aa22.39■■□□□ 1.18
CLN3-219ENST00000565778 KRBA1A5PL33 1030 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 KPNA7A9QM74 516 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 PI15O43692 258 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 CYP11A1P05108 521 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 ALDH1A3P47895 512 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 RESP18Q5W5W9 173 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 TCEAL4Q96EI5 215 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 TMEM209Q96SK2 561 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 KXD1Q9BQD3 176 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 IRF2BPLQ9H1B7 796 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 MAGEF1Q9HAY2 307 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 SLC2A4RGQ9NR83 387 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 AGAP1Q9UPQ3 857 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 MUC6Q6W4X9 2439 aa22.39■■□□□ 1.17
CLN3-219ENST00000565778 H0Y858 1186 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 KIAA0391O15091 583 aaKnown RBP22.38■■□□□ 1.17
CLN3-219ENST00000565778 GALR2O43603 387 aaPredicted RBP22.38■■□□□ 1.17
CLN3-219ENST00000565778 MYL4P12829 197 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 CEBPBP17676 345 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 AOC1P19801 751 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 AFMP43652 599 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 EPHB3P54753 998 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 WNT7BP56706 349 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 SV2CQ496J9 727 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 CWF19L1Q69YN2 538 aaKnown RBP22.38■■□□□ 1.17
CLN3-219ENST00000565778 CENPPQ6IPU0 288 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 CNNM4Q6P4Q7 775 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 GPD1LQ8N335 351 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 CSGALNACT2Q8N6G5 542 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 ATAD1Q8NBU5 361 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 RTP3Q9BQQ7 232 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 BLZF1Q9H2G9 400 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 PDE11AQ9HCR9 933 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 YIPF1Q9Y548 306 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 DOCK8Q8NF50 2099 aa22.38■■□□□ 1.17
CLN3-219ENST00000565778 ZDBF2Q9HCK1 2354 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 ZNF233A6NK53 670 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 EIF3DO15371 548 aaKnown RBP eCLIP22.37■■□□□ 1.17
CLN3-219ENST00000565778 MICAL2O94851 1124 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 VNN2O95498 520 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 ITGB3P05106 788 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 CASP1P29466 404 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 PNPLA4P41247 253 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 PLD1Q13393 1074 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 PRSS36Q5K4E3 855 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 FAM26FQ5R3K3 315 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 WSCD1Q658N2 575 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 UNC13DQ70J99 1090 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 CEP57L1Q8IYX8 460 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 ZNF507Q8TCN5 953 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 ATOH1Q92858 354 aaPredicted RBP22.37■■□□□ 1.17
CLN3-219ENST00000565778 BORCS6Q96GS4 357 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 ZNF560Q96MR9 790 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 CRISPLD1Q9H336 500 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 ASAH2Q9NR71 780 aa22.37■■□□□ 1.17
CLN3-219ENST00000565778 MTMR11A4FU01 709 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 KRT19P08727 400 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 POLR2BP30876 1174 aaKnown RBP22.36■■□□□ 1.17
CLN3-219ENST00000565778 HOXD13P35453 343 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 CCR2P41597 374 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 CDR1P51861 262 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 SLC39A12Q504Y0 691 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 C1orf127Q8N9H9 656 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 LEMD2Q8NC56 503 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 OR10T2Q8NGX3 314 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 ARHGEF3Q9NR81 526 aa22.36■■□□□ 1.17
CLN3-219ENST00000565778 R3HCC1Q9Y3T6 440 aaKnown RBP22.36■■□□□ 1.17
CLN3-219ENST00000565778 MYH15Q9Y2K3 1946 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 ECI2O75521 394 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 TMEM191BP0C7N4 346 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 GJA1P17302 382 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 MRE11P49959 708 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 TANGO2Q6ICL3 276 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 POTEHQ6S545 545 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 EPM2AIP1Q7L775 607 aaPredicted RBP22.35■■□□□ 1.17
CLN3-219ENST00000565778 NELFCDQ8IXH7 590 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 RDH13Q8NBN7 331 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 ZCWPW1Q9H0M4 648 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 TBC1D17Q9HA65 648 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 KIAA1586Q9HCI6 787 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 HSPBP1Q9NZL4 362 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms