RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 LRG1P02750 347 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 CEBPBP17676 345 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 FCARP24071 287 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 DNM1Q05193 864 aaKnown RBP16.09■□□□□ 0.17
CLN3-213ENST00000565047 TWF1Q12792 350 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 FOXD4L6Q3SYB3 417 aaPredicted RBP16.09■□□□□ 0.17
CLN3-213ENST00000565047 RESP18Q5W5W9 173 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 OVOS1Q6IE37 1185 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 CENPPQ6IPU0 288 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 FOXD4L3Q6VB84 417 aaPredicted RBP16.09■□□□□ 0.17
CLN3-213ENST00000565047 CCDC65Q8IXS2 484 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 HS6ST3Q8IZP7 471 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 C1orf127Q8N9H9 656 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 IQUBQ8NA54 791 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 ZNF507Q8TCN5 953 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 ING5Q8WYH8 240 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 CORO1BQ9BR76 489 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 PLA2G2FQ9BZM2 168 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 TMEM206Q9H813 350 aa16.09■□□□□ 0.17
CLN3-213ENST00000565047 MRPS23Q9Y3D9 190 aaKnown RBP16.09■□□□□ 0.17
CLN3-213ENST00000565047 PIEZO1Q92508 2521 aa16.08■□□□□ 0.17
CLN3-213ENST00000565047 MTMR11A4FU01 709 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 POLR2DO15514 142 aaKnown RBP16.08■□□□□ 0.16
CLN3-213ENST00000565047 TGFB1I1O43294 461 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 EXTL3O43909 919 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 LDHAP00338 332 aaKnown RBP16.08■□□□□ 0.16
CLN3-213ENST00000565047 CPB1P15086 417 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 TAF6P49848 677 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 DUSP4Q13115 394 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 MTSS1LQ765P7 747 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 ALYREFQ86V81 257 aaKnown RBP16.08■□□□□ 0.16
CLN3-213ENST00000565047 TMC8Q8IU68 726 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 TTC9BQ8N6N2 239 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 SPRYD3Q8NCJ5 442 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 MCRS1Q96EZ8 462 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 FAM84AQ96KN4 292 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 PGLYRP2Q96PD5 576 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 LRRC27Q9C0I9 530 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 DLGAP2Q9P1A6 1054 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 HSFX1Q9UBD0 423 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 YIPF1Q9Y548 306 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 CACNA1HO95180 2353 aa16.08■□□□□ 0.16
CLN3-213ENST00000565047 GOLGA8IPA6NC78 632 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 SHISA7A6NL88 538 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 GOLGA8JA6NMD2 632 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 KPNA7A9QM74 516 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 CYB561D2O14569 222 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 EIF3DO15371 548 aaKnown RBP eCLIP16.07■□□□□ 0.16
CLN3-213ENST00000565047 ECI2O75521 394 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 ODC1P11926 461 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 CASP1P29466 404 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 PHLDB3Q6NSJ2 640 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 USP37Q86T82 979 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 LRRTM3Q86VH5 581 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 ATAD1Q8NBU5 361 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 FLCNQ8NFG4 579 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 CHAMP1Q96JM3 812 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 ZSWIM3Q96MP5 696 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 DDX23Q9BUQ8 820 aaKnown RBP16.07■□□□□ 0.16
CLN3-213ENST00000565047 ZCWPW1Q9H0M4 648 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 MFSD1Q9H3U5 465 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 PCIF1Q9H4Z3 704 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 MAGEF1Q9HAY2 307 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 PDE11AQ9HCR9 933 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 RBAKQ9NYW8 714 aaPredicted RBP16.07■□□□□ 0.16
CLN3-213ENST00000565047 SIX4Q9UIU6 781 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 FBXL21Q9UKT6 434 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 CA14Q9ULX7 337 aa16.07■□□□□ 0.16
CLN3-213ENST00000565047 COL4A3Q01955 1670 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 PTPRJQ12913 1337 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 MRE11P49959 708 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 STARD6P59095 220 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 AMPD3Q01432 767 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 WSCD1Q658N2 575 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 TANGO2Q6ICL3 276 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 UNC13DQ70J99 1090 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 LIMS2Q7Z4I7 341 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 SYCP3Q8IZU3 236 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 SCFD1Q8WVM8 642 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 KXD1Q9BQD3 176 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 ARHGEF3Q9NR81 526 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 DSEQ9UL01 958 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 CFAP45Q9UL16 551 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 SLC27A5Q9Y2P5 690 aa16.06■□□□□ 0.16
CLN3-213ENST00000565047 NCANO14594 1321 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 H0Y858 1186 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 ZNF197O14709 1029 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 KIAA0391O15091 583 aaKnown RBP16.05■□□□□ 0.16
CLN3-213ENST00000565047 KLRC4O43908 158 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 HSP90AA1P07900 732 aaKnown RBP16.05■□□□□ 0.16
CLN3-213ENST00000565047 CUL4BQ13620 913 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 BMT2Q1RMZ1 405 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 FAM78AQ5JUQ0 283 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 FAM26FQ5R3K3 315 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 PDZD4Q76G19 769 aaPredicted RBP16.05■□□□□ 0.16
CLN3-213ENST00000565047 CBWD2Q8IUF1 395 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 CCDC105Q8IYK2 499 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 GPD1LQ8N335 351 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 SHKBP1Q8TBC3 707 aa16.05■□□□□ 0.16
CLN3-213ENST00000565047 ELSPBP1Q96BH3 223 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms