RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 KCNJ2P63252 427 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 MAP3K10Q02779 954 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 TCEAL1Q15170 157 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 SUPT20HL1Q3ZLR7 823 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 DCUN1D2Q6PH85 259 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 RHOT1Q8IXI2 618 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 PARP9Q8IXQ6 854 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 ABRAQ8N0Z2 381 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 C12orf50Q8NA57 414 aaPredicted RBP14.29□□□□□ -0.12
CLK3-215ENST00000564353 MORC4Q8TE76 937 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 LRRN4Q8WUT4 740 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 SLC7A3Q8WY07 619 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 TIPINQ9BVW5 301 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 WHRNQ9P202 907 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 STK38LQ9Y2H1 464 aa14.29□□□□□ -0.12
CLK3-215ENST00000564353 LRRD1A4D1F6 860 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 A8MUI8 341 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 CYP1A1P04798 512 aaPredicted RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 GPS1Q13098 491 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 TNFAIP1Q13829 316 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 PTK6Q13882 451 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 PSMD6Q15008 389 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 TMEM63BQ5T3F8 832 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 LIN9Q5TKA1 542 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 TRPM8Q7Z2W7 1104 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 RUNDC3BQ96NL0 473 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 PIM2Q9P1W9 311 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 ITGBL1O95965 494 aaPredicted RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 KRT19P08727 400 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 STX2P32856 288 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 ARSEP51690 589 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 ZNF252P-AS1Q0IIN9 211 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 NFX1Q12986 1120 aaKnown RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 KLF1Q13351 362 aaPredicted RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 LY6KQ17RY6 165 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 TMEM132AQ24JP5 1023 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 XKR3Q5GH77 459 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 TRMT10CQ7L0Y3 403 aaKnown RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 SUGP1Q8IWZ8 645 aaKnown RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 EMC1Q8N766 993 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 MTMR14Q8NCE2 650 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 PRCCQ92733 491 aaPredicted RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 TGS1Q96RS0 853 aaKnown RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 TRAIPQ9BWF2 469 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 VPS37BQ9H9H4 285 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 ATXN2Q99700 1313 aaKnown RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 ZNFX1Q9P2E3 1918 aaKnown RBP14.28□□□□□ -0.12
CLK3-215ENST00000564353 RASA4BC9J798 803 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 PMM2O15305 246 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 RASA4O43374 803 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 OATP04181 439 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 CD19P15391 556 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 CDH8P55286 799 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 CAPSQ13938 189 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 PIGWQ7Z7B1 504 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 SCYL3Q8IZE3 742 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 KIRREL3Q8IZU9 778 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 REPS2Q8NFH8 660 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 RMDN2Q96LZ7 410 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 HOMER3Q9NSC5 361 aa14.28□□□□□ -0.12
CLK3-215ENST00000564353 KIF1CO43896 1103 aaKnown RBP14.27□□□□□ -0.12
CLK3-215ENST00000564353 SNRPFP62306 86 aaKnown RBP14.27□□□□□ -0.12
CLK3-215ENST00000564353 EFTUD2Q15029 972 aaKnown RBP eCLIP14.27□□□□□ -0.12
CLK3-215ENST00000564353 PRPF31Q8WWY3 499 aaKnown RBP14.27□□□□□ -0.12
CLK3-215ENST00000564353 TFAP2BQ92481 460 aa14.27□□□□□ -0.12
CLK3-215ENST00000564353 CENPTQ96BT3 561 aa14.27□□□□□ -0.12
CLK3-215ENST00000564353 ACAD9Q9H845 621 aa14.27□□□□□ -0.12
CLK3-215ENST00000564353 PCSK1NQ9UHG2 260 aa14.27□□□□□ -0.12
CLK3-215ENST00000564353 WDR91A4D1P6 747 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 SGK1O00141 431 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 NFKBIEO00221 500 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 SNX3O60493 162 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 PECAM1P16284 738 aaPredicted RBP14.27□□□□□ -0.13
CLK3-215ENST00000564353 MAGEA4P43358 317 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 SPDYCQ5MJ68 293 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 GPAT2Q6NUI2 795 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 ZBED8Q8IZ13 594 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 SLC17A8Q8NDX2 589 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 FEZF2Q8TBJ5 459 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 KLF6Q99612 283 aaPredicted RBP14.27□□□□□ -0.13
CLK3-215ENST00000564353 TEX13BQ9BXU2 312 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 ACTR5Q9H9F9 607 aaPredicted RBP14.27□□□□□ -0.13
CLK3-215ENST00000564353 SLCO1B3Q9NPD5 702 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 POLIQ9UNA4 740 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 L3MBTL1Q9Y468 752 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 AFG3L2Q9Y4W6 797 aa14.27□□□□□ -0.13
CLK3-215ENST00000564353 EXOC1LA0A1B0GW35 172 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 GOLGA8RI6L899 631 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 MAP3K6O95382 1288 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 RPSAP08865 295 aaKnown RBP14.26□□□□□ -0.13
CLK3-215ENST00000564353 MAP2K2P36507 400 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 DNAJC3Q13217 504 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 SNCBQ16143 134 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 GNPTABQ3T906 1256 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 TREML2Q5T2D2 321 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 RPAINQ86UA6 219 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 TMEM192Q8IY95 271 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 PORCNQ9H237 461 aa14.26□□□□□ -0.13
CLK3-215ENST00000564353 NEU2Q9Y3R4 380 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms