RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TACC1O75410 805 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 AARSP49588 968 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLK3-214ENST00000564096 PTK2Q05397 1052 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 INCA1Q0VD86 236 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 ELAVL2Q12926 359 aaKnown RBP13.7□□□□□ -0.22
CLK3-214ENST00000564096 PAN2Q504Q3 1202 aaKnown RBP13.7□□□□□ -0.22
CLK3-214ENST00000564096 TMEM240Q5SV17 173 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 CCDC170Q8IYT3 715 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 ADGRF2Q8IZF7 708 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 TMEM86AQ8N2M4 240 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 CCDC42Q96M95 316 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 COLEC11Q9BWP8 271 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 SNX25Q9H3E2 840 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 LUC7LQ9NQ29 371 aaKnown RBP13.7□□□□□ -0.22
CLK3-214ENST00000564096 SLC4A7Q9Y6M7 1214 aa13.7□□□□□ -0.22
CLK3-214ENST00000564096 SF3B1O75533 1304 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLK3-214ENST00000564096 FOXN3O00409 490 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 CYB561D2O14569 222 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 AKR1B10O60218 316 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 KIF4AO95239 1232 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 FAM163BP0C2L3 166 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 PNMA6AP0CW24 399 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 LAG3P18627 525 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 ACO1P21399 889 aaKnown RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 RAP1GAPP47736 663 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 GATMP50440 423 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 CCZ1BP86790 482 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 CCZ1P86791 482 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 BTG3Q14201 252 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 SPOUT1Q5T280 376 aaKnown RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 E4F1Q66K89 784 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 UNC93AQ86WB7 457 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 METTL23Q86XA0 190 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 ZNF677Q86XU0 584 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 ZNF280BQ86YH2 543 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 TXLNBQ8N3L3 684 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 UBR7Q8N806 425 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 PHOSPHO2Q8TCD6 241 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 ELMO3Q96BJ8 720 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.69□□□□□ -0.222e-8■■■□□ 18
CLK3-214ENST00000564096 ZBED2Q9BTP6 218 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 NRDE2Q9H7Z3 1164 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 RC3H2Q9HBD1 1191 aaKnown RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 AAASQ9NRG9 546 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 BARX2Q9UMQ3 279 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 CNTN6Q9UQ52 1028 aa13.69□□□□□ -0.22
CLK3-214ENST00000564096 PRG3Q9Y2Y8 225 aaPredicted RBP13.69□□□□□ -0.22
CLK3-214ENST00000564096 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLK3-214ENST00000564096 TTC3P53804 2025 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 SOWAHDA6NJG2 315 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 RBAK-RBAKDNI3L0D1 243 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 SPTLC1O15269 473 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 CYP26A1O43174 497 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 CCP110O43303 1012 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 MED7O43513 233 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 CILPO75339 1184 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 DDHD2O94830 711 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 GJB5O95377 273 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 PAEPP09466 180 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 WEE2P0C1S8 567 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 CYP11B1P15538 503 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 WARSP23381 471 aaKnown RBP13.68□□□□□ -0.22
CLK3-214ENST00000564096 GNA15P30679 374 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 ALDH7A1P49419 539 aaKnown RBP13.68□□□□□ -0.22
CLK3-214ENST00000564096 ZNF132P52740 706 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 SPA17Q15506 151 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 FAM117BQ6P1L5 589 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 WDR59Q6PJI9 974 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 C16orf59Q7L2K0 433 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 TMEM139Q8IV31 216 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 TMEM130Q8N3G9 435 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 C3orf58Q8NDZ4 430 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 OR6B3Q8NGW1 331 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 EPS8L1Q8TE68 723 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 ZNF689Q96CS4 500 aaPredicted RBP13.68□□□□□ -0.22
CLK3-214ENST00000564096 TNIP3Q96KP6 325 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 SENP8Q96LD8 212 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 NT5C1AQ9BXI3 368 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 KCNF1Q9H3M0 494 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 HAUS4Q9H6D7 363 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 NHEJ1Q9H9Q4 299 aaPredicted RBP13.68□□□□□ -0.22
CLK3-214ENST00000564096 SEPT11Q9NVA2 429 aaKnown RBP13.68□□□□□ -0.22
CLK3-214ENST00000564096 PUF60Q9UHX1 559 aaKnown RBP13.68□□□□□ -0.22
CLK3-214ENST00000564096 ADAM28Q9UKQ2 775 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 L1RE1Q9UN81 338 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 FAN1Q9Y2M0 1017 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 COL4A6Q14031 1691 aa13.68□□□□□ -0.22
CLK3-214ENST00000564096 TET1Q8NFU7 2136 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 TDRD15B5MCY1 1934 aaKnown RBP13.67□□□□□ -0.22
CLK3-214ENST00000564096 M0QZQ0 153 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 SYN3O14994 580 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 TADA2AO75478 443 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 ALDH2P05091 517 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 ATP2A2P16615 1042 aaKnown RBP13.67□□□□□ -0.22
CLK3-214ENST00000564096 TYMPP19971 482 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 PCSK1P29120 753 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 PPM1AP35813 382 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 LHX1P48742 406 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 SLC11A1P49279 550 aa13.67□□□□□ -0.22
CLK3-214ENST00000564096 KIF11P52732 1056 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms