RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ATRIPQ8WXE1 791 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 SHC3Q92529 594 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 TAF4BQ92750 862 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 TATDN2Q93075 761 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 FAXDC2Q96IV6 333 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 ACAP3Q96P50 834 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 ASB2Q96Q27 587 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 PPP1R16BQ96T49 567 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 C17orf80Q9BSJ5 609 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 CCDC94Q9BW85 323 aaPredicted RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 CDT1Q9H211 546 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 PDZD7Q9H5P4 517 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 AGO3Q9H9G7 860 aaKnown RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 PRDM6Q9NQX0 595 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 SEPT11Q9NVA2 429 aaKnown RBP9.57□□□□□ -0.88
VPS39-207ENST00000563692 PADI3Q9ULW8 664 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 COG5Q9UP83 839 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 JRKLQ9Y4A0 524 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 A0A0C4DFX4 3053 aa9.57□□□□□ -0.88
VPS39-207ENST00000563692 CUL9Q8IWT3 2517 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 ANO9A1A5B4 782 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 RCCD1A6NED2 376 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 DDX3XO00571 662 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS39-207ENST00000563692 CYP26A1O43174 497 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 FAM189A1O60320 539 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 TSPAN1O60635 241 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 LPXNO60711 386 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 GPR32O75388 356 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 ABL1P00519 1130 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 GZMAP12544 262 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 KRT5P13647 590 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 DARSP14868 501 aaKnown RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 IBSPP21815 317 aaPredicted RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 EIF4BP23588 611 aaKnown RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 CTNNB1P35222 781 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 NOP2P46087 812 aaKnown RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 PDE6CP51160 858 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 YARSP54577 528 aaKnown RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 OSTNP61366 133 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 YWHAEP62258 255 aaKnown RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 CUL2Q13617 745 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 TIGD5Q53EQ6 642 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 EEF1DP3Q658K8 133 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 LMBRD2Q68DH5 695 aaPredicted RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 PPP1R2P3Q6NXS1 205 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 NOTUMQ6P988 496 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 SLC27A1Q6PCB7 646 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 ZNF677Q86XU0 584 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 GLYCTKQ8IVS8 523 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 TMEM192Q8IY95 271 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 OR5B17Q8NGF7 314 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 UBE2Q2Q8WVN8 375 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 HLA-CQ95604 372 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 CPB2Q96IY4 423 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 KREMEN1Q96MU8 473 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 C11orf84Q9BUA3 381 aaPredicted RBP9.56□□□□□ -0.88
VPS39-207ENST00000563692 PLEKHA5Q9HAU0 1116 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.56□□□□□ -0.882e-10■■■■■ 319.1
VPS39-207ENST00000563692 TRIM10Q9UDY6 481 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 CDC23Q9UJX2 597 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 PCDHB7Q9Y5E2 793 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 SAR1BQ9Y6B6 198 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 DUSP10Q9Y6W6 482 aa9.56□□□□□ -0.88
VPS39-207ENST00000563692 GBF1Q92538 1859 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PRRC2BQ5JSZ5 2229 aaKnown RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 A0A0A6YYK5 440 aaPredicted RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 ANKRD62A6NC57 917 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 LACTBL1A8MY62 500 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 CTIFO43310 598 aaKnown RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 RTN2O75298 545 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 CSDE1O75534 798 aaKnown RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 MOCS3O95396 460 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 VNN1O95497 513 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 CST3P01034 146 aaPredicted RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 RB1P06400 928 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 TMEM253P0C7T8 217 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PNMA6AP0CW24 399 aaPredicted RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 P4HA1P13674 534 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 CYP11B1P15538 503 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PRLRP16471 622 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 ATICP31939 592 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 GRM5P41594 1212 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 GPM6BQ13491 265 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 WHAMMP3Q1A5X7 153 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PAPD7Q5XG87 772 aaKnown RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 SPRED2Q7Z698 418 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 CDR2LQ86X02 465 aaPredicted RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 SYCE1Q8N0S2 351 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 CTNNBL1Q8WYA6 563 aaPredicted RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 MRPL38Q96DV4 380 aaKnown RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 TSPAN18Q96SJ8 248 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 OSMRQ99650 979 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PI4K2AQ9BTU6 479 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 TRIM6Q9C030 488 aaPredicted RBP9.55□□□□□ -0.88
VPS39-207ENST00000563692 PDCL3Q9H2J4 239 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 ST3GAL5Q9UNP4 418 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 TFR2Q9UP52 801 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 DERAQ9Y315 318 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PCDHB4Q9Y5E5 795 aa9.55□□□□□ -0.88
VPS39-207ENST00000563692 PCDHB2Q9Y5E7 798 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms