RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TBXAS1P24557 533 aaPredicted RBP17.77■□□□□ 0.44
VPS4A-202ENST00000562754 CDH8P55286 799 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 FUT10Q6P4F1 479 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 DSTYKQ6XUX3 929 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 KBTBD7Q8WVZ9 684 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 BAP1Q92560 729 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 FAXDC2Q96IV6 333 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 MMS19Q96T76 1030 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 GPR62Q9BZJ7 368 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 GPR88Q9GZN0 384 aa17.77■□□□□ 0.44
VPS4A-202ENST00000562754 SF3B1O75533 1304 aaKnown RBP eCLIP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 PNMA6AP0CW24 399 aaPredicted RBP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 ACO1P21399 889 aaKnown RBP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 CTNNB1P35222 781 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 FXR1P51114 621 aaKnown RBP eCLIP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 JAM2P57087 298 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 RAPGEF1Q13905 1077 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 ARHGAP44Q17R89 818 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 WSCD1Q658N2 575 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 ENOSF1Q7L5Y1 443 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 OSTM1Q86WC4 334 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 RNF168Q8IYW5 571 aaPredicted RBP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 PDCL2Q8N4E4 241 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 TOP6BLQ8N6T0 577 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 SHC3Q92529 594 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 MRPL45Q9BRJ2 306 aaKnown RBP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 C17orf80Q9BSJ5 609 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 NUP58Q9BVL2 599 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 NKX2-4Q9H2Z4 354 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 CYP3A43Q9HB55 503 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 AAASQ9NRG9 546 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 SPG21Q9NZD8 308 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 PCDHB8Q9UN66 801 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 DAAM1Q9Y4D1 1078 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 NME7Q9Y5B8 376 aa17.76■□□□□ 0.43
VPS4A-202ENST00000562754 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.76■□□□□ 0.433e-6■■□□□ 12
VPS4A-202ENST00000562754 TIMM13Q9Y5L4 95 aaPredicted RBP17.76■□□□□ 0.43
VPS4A-202ENST00000562754 A0A1W2PQJ5 194 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 F8VZ95 297 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 HUS1O60921 280 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 CYP11A1P05108 521 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 ODC1P11926 461 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 CD58P19256 250 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 TKTP29401 623 aaKnown RBP17.75■□□□□ 0.43
VPS4A-202ENST00000562754 PPM1AP35813 382 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 BMPR1AP36894 532 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 MFAP3P55082 362 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 TAP1Q03518 808 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 GOLGA8FQ08AF8 430 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 GOLGA8DPQ0D2H9 430 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 TRIM14Q14142 442 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 DRAP1Q14919 205 aaPredicted RBP17.75■□□□□ 0.43
VPS4A-202ENST00000562754 RAB30Q15771 203 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 ADGRF2Q8IZF7 708 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 SPC24Q8NBT2 197 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 APPL2Q8NEU8 664 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 CPLX3Q8WVH0 158 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 IQCDQ96DY2 449 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 FAM81BQ96LP2 452 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 STK33Q9BYT3 514 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 EDEM3Q9BZQ6 932 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 CISHQ9NSE2 258 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 HMGXB4Q9UGU5 601 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 CAPN11Q9UMQ6 739 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 PCDHB12Q9Y5F1 795 aa17.75■□□□□ 0.43
VPS4A-202ENST00000562754 CARNS1A5YM72 827 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 HCRTO43612 131 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 TRAPPC3O43617 180 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 TACC1O75410 805 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 TYMPP19971 482 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 FGFR3P22607 806 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 WARSP23381 471 aaKnown RBP17.74■□□□□ 0.43
VPS4A-202ENST00000562754 CASP14P31944 242 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 INCA1Q0VD86 236 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 FAM171A1Q5VUB5 890 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 E4F1Q66K89 784 aaPredicted RBP17.74■□□□□ 0.43
VPS4A-202ENST00000562754 PDXDC1Q6P996 788 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 DPH6Q7L8W6 267 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 TAS1R1Q7RTX1 841 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 CACNA2D4Q7Z3S7 1137 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 GPIHBP1Q8IV16 184 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 DRC7Q8IY82 874 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 KLHL23Q8NBE8 558 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 WHAMMQ8TF30 809 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 TMEM169Q96HH4 297 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 B3GALT6Q96L58 329 aa17.74■□□□□ 0.43
VPS4A-202ENST00000562754 LRRC53A6NM62 1247 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 FOXN3O00409 490 aaPredicted RBP17.73■□□□□ 0.43
VPS4A-202ENST00000562754 SYN3O14994 580 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 MFAP3LO75121 409 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 CILPO75339 1184 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 FGF18O76093 207 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 ELAVL2Q12926 359 aaKnown RBP17.73■□□□□ 0.43
VPS4A-202ENST00000562754 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.73■□□□□ 0.43
VPS4A-202ENST00000562754 PPFIBP1Q86W92 1011 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 TMEM86AQ8N2M4 240 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 JAKMIP2Q96AA8 810 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 PDLIM2Q96JY6 352 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 SPAG5Q96R06 1193 aa17.73■□□□□ 0.43
VPS4A-202ENST00000562754 TWNKQ96RR1 684 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms