RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 RHOP08100 348 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 POU2F2P09086 479 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 POLR2BP30876 1174 aaKnown RBP16.91■□□□□ 0.3
VPS39-203ENST00000561797 SYKP43405 635 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 SV2CQ496J9 727 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 LMBRD2Q68DH5 695 aaPredicted RBP16.91■□□□□ 0.3
VPS39-203ENST00000561797 METTL23Q86XA0 190 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 CBWD2Q8IUF1 395 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 SUGP1Q8IWZ8 645 aaKnown RBP16.91■□□□□ 0.3
VPS39-203ENST00000561797 FBXL6Q8N531 539 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 CSGALNACT2Q8N6G5 542 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 RDH13Q8NBN7 331 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 FGF13Q92913 245 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 ZNF560Q96MR9 790 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 CORO1BQ9BR76 489 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 OXCT2Q9BYC2 517 aaPredicted RBP16.91■□□□□ 0.3
VPS39-203ENST00000561797 CDH7Q9ULB5 785 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 HPSEQ9Y251 543 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 UBE4BO95155 1302 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 KPNA7A9QM74 516 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 NARSO43776 548 aaKnown RBP16.9■□□□□ 0.3
VPS39-203ENST00000561797 KLRC4O43908 158 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 KRT19P08727 400 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 TMEM191BP0C7N4 346 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 CYP2J2P51589 502 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 CDR1P51861 262 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 NDUFA8P51970 172 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 TWF1Q12792 350 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 GPR17Q13304 367 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 SCARA3Q6AZY7 606 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 ELMOD1Q8N336 334 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 SLC44A3Q8N4M1 653 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 C1orf127Q8N9H9 656 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 BORCS6Q96GS4 357 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 AGPAT3Q9NRZ7 376 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 EXOC1Q9NV70 894 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 USP25Q9UHP3 1055 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 DSEQ9UL01 958 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 DUSP12Q9UNI6 340 aa16.9■□□□□ 0.3
VPS39-203ENST00000561797 MRPS23Q9Y3D9 190 aaKnown RBP16.9■□□□□ 0.3
VPS39-203ENST00000561797 ZFP37Q9Y6Q3 630 aaPredicted RBP16.9■□□□□ 0.3
VPS39-203ENST00000561797 ZNF638Q14966 1978 aaKnown RBP16.89■□□□□ 0.3
VPS39-203ENST00000561797 VNN2O95498 520 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 CYP11A1P05108 521 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 PNPLA4P41247 253 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 BFSP1Q12934 665 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 DUSP4Q13115 394 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 HTR4Q13639 388 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 MYBPC2Q14324 1141 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 SLC5A9Q2M3M2 681 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 KMT5BQ4FZB7 885 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 WSCD1Q658N2 575 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 HS6ST3Q8IZP7 471 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 FSIP1Q8NA03 581 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 OR10T2Q8NGX3 314 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 MCRS1Q96EZ8 462 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 ANKRD36BP1Q96IX9 119 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 ZNF512Q96ME7 567 aaPredicted RBP16.89■□□□□ 0.29
VPS39-203ENST00000561797 MTMR12Q9C0I1 747 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 CRISPLD1Q9H336 500 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 KIAA1586Q9HCI6 787 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 FBXL21Q9UKT6 434 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 MAFFQ9ULX9 164 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 SLC27A5Q9Y2P5 690 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 NUMBLQ9Y6R0 609 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 DENND4CQ5VZ89 1909 aa16.89■□□□□ 0.29
VPS39-203ENST00000561797 MTMR11A4FU01 709 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 ANHXE9PGG2 379 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 CFHP08603 1231 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 VCPP55072 806 aaKnown RBP16.88■□□□□ 0.29
VPS39-203ENST00000561797 STK4Q13043 487 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 SURF1Q15526 300 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 KNOP1Q1ED39 458 aaKnown RBP16.88■□□□□ 0.29
VPS39-203ENST00000561797 SLC39A12Q504Y0 691 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 IQCEQ6IPM2 695 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 PARM1Q6UWI2 310 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 HS2ST1Q7LGA3 356 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 NPAS3Q8IXF0 933 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 THEM5Q8N1Q8 247 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 ATAD1Q8NBU5 361 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 OR5B17Q8NGF7 314 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 FGF14Q92915 247 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 NXPE3Q969Y0 559 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 RPP25Q9BUL9 199 aaKnown RBP16.88■□□□□ 0.29
VPS39-203ENST00000561797 MFSD1Q9H3U5 465 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 GOLPH3LQ9H4A5 285 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 INTS13Q9NVM9 706 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 CEP72Q9P209 647 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 ITGA11Q9UKX5 1188 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 R3HCC1Q9Y3T6 440 aaKnown RBP16.88■□□□□ 0.29
VPS39-203ENST00000561797 YIPF1Q9Y548 306 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 PTPRJQ12913 1337 aa16.88■□□□□ 0.29
VPS39-203ENST00000561797 A0A1W2PQ27 194 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 A0A1W2PQ64 194 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 A0A1W2PQD8 194 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 TNNC2P02585 160 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 PRR29P0C7W0 189 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 MYL4P12829 197 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 CEBPBP17676 345 aa16.87■□□□□ 0.29
VPS39-203ENST00000561797 SNRPFP62306 86 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms