RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RSPO2Q6UXX9 243 aaPredicted RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 LIMS2Q7Z4I7 341 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 NSUN3Q9H649 340 aaKnown RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 RXFP1Q9HBX9 757 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 MRPL17Q9NRX2 175 aaKnown RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 TAB2Q9NYJ8 693 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 MAGEC2Q9UBF1 373 aaPredicted RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 ADAM12O43184 909 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 CYP11A1P05108 521 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 CNPP09543 421 aaKnown RBP23.39■■□□□ 1.34
SNX1-210ENST00000560260 ODC1P11926 461 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 TYMPP19971 482 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 EEF1GP26641 437 aaKnown RBP23.39■■□□□ 1.34
SNX1-210ENST00000560260 ATICP31939 592 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 CA8P35219 290 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 MYO1EQ12965 1108 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 KRT31Q15323 416 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 PSMD5Q16401 504 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 MAN2A1Q16706 1144 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 WSCD1Q658N2 575 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 PDE12Q6L8Q7 609 aaKnown RBP23.39■■□□□ 1.34
SNX1-210ENST00000560260 KIAA1841Q6NSI8 718 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 LUZP1Q86V48 1076 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 OSTM1Q86WC4 334 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 MICALL1Q8N3F8 863 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 PDCL2Q8N4E4 241 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 FBXL13Q8NEE6 735 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 MTRRQ9UBK8 725 aa23.39■■□□□ 1.34
SNX1-210ENST00000560260 R3HCC1Q9Y3T6 440 aaKnown RBP23.39■■□□□ 1.34
SNX1-210ENST00000560260 PMM2O15305 246 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 TBC1D4O60343 1298 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 ATP1A3P13637 1013 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 GTF2F1P35269 517 aaKnown RBP eCLIP23.38■■□□□ 1.33
SNX1-210ENST00000560260 SOWAHAQ2M3V2 549 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 GPR65Q8IYL9 337 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 APPL2Q8NEU8 664 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 KLHL5Q96PQ7 755 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 RTP3Q9BQQ7 232 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 TUBGCP2Q9BSJ2 902 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 SDCBP2Q9H190 292 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 TSPY26PQ9H489 355 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 RAB20Q9NX57 234 aa23.38■■□□□ 1.33
SNX1-210ENST00000560260 PER2O15055 1255 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 TEX28O15482 410 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 HCRTO43612 131 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 NOP14P78316 857 aaKnown RBP23.37■■□□□ 1.33
SNX1-210ENST00000560260 SGSM1Q2NKQ1 1148 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 WDR72Q3MJ13 1102 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 SCARA5Q6ZMJ2 495 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 APTXQ7Z2E3 356 aaKnown RBP23.37■■□□□ 1.33
SNX1-210ENST00000560260 TOP6BLQ8N6T0 577 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 LMO3Q8TAP4 145 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 FAM200AQ8TCP9 573 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 KBTBD7Q8WVZ9 684 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 CLSTN3Q9BQT9 956 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 SMYD3Q9H7B4 428 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 NXF1Q9UBU9 619 aaKnown RBP23.37■■□□□ 1.33
SNX1-210ENST00000560260 NME7Q9Y5B8 376 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 PLXNA3P51805 1871 aa23.37■■□□□ 1.33
SNX1-210ENST00000560260 N4BP1O75113 896 aaKnown RBP23.36■■□□□ 1.33
SNX1-210ENST00000560260 PRKCSHP14314 528 aaPredicted RBP23.36■■□□□ 1.33
SNX1-210ENST00000560260 ASPAP45381 313 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 RAP1GAPP47736 663 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 YWHAHQ04917 246 aaPredicted RBP23.36■■□□□ 1.33
SNX1-210ENST00000560260 HYAL1Q12794 435 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 ZNF667Q5HYK9 610 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 ANKS3Q6ZW76 656 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 RBM23Q86U06 439 aaKnown RBP23.36■■□□□ 1.33
SNX1-210ENST00000560260 GLYCTKQ8IVS8 523 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 TAF4BQ92750 862 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 MRPL45Q9BRJ2 306 aaKnown RBP23.36■■□□□ 1.33
SNX1-210ENST00000560260 FNIP2Q9P278 1114 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 LIMA1Q9UHB6 759 aaKnown RBP23.36■■□□□ 1.33
SNX1-210ENST00000560260 FBXL5Q9UKA1 691 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 BACE2Q9Y5Z0 518 aa23.36■■□□□ 1.33
SNX1-210ENST00000560260 SMTNL1A8MU46 457 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 P4HA2O15460 535 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 HUS1O60921 280 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 CLASP2O75122 1294 aaKnown RBP23.35■■□□□ 1.33
SNX1-210ENST00000560260 OAZ2O95190 189 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 NRIP1P48552 1158 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 TNNC1P63316 161 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 RBM10P98175 930 aaKnown RBP23.35■■□□□ 1.33
SNX1-210ENST00000560260 DUSP6Q16828 381 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 VWA3BQ502W6 1294 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 OVOS1Q6IE37 1185 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 ZNF280DQ6N043 979 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 ADGRF2Q8IZF7 708 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 VN1R2Q8NFZ6 395 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 OR10T2Q8NGX3 314 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 TMEM209Q96SK2 561 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 NDST4Q9H3R1 872 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.35■■□□□ 1.33
SNX1-210ENST00000560260 SSX2IPQ9Y2D8 614 aa23.35■■□□□ 1.33
SNX1-210ENST00000560260 CLSTN1O94985 981 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 CTXN3Q4LDR2 81 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 TATDN2Q93075 761 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 MMS19Q96T76 1030 aa23.34■■□□□ 1.33
SNX1-210ENST00000560260 INTS2Q9H0H0 1204 aaKnown RBP23.34■■□□□ 1.33
SNX1-210ENST00000560260 VPS16Q9H269 839 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms