RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 SOX4Q06945 474 aaPredicted RBP6.4□□□□□ -1.38
USP3-215ENST00000559771 TUSC1Q2TAM9 212 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 NT5DC1Q5TFE4 455 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 PARM1Q6UWI2 310 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 GRASPQ7Z6J2 395 aaPredicted RBP6.4□□□□□ -1.38
USP3-215ENST00000559771 NOSTRINQ8IVI9 506 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 PGBD3Q8N328 593 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 ITFG1Q8TB96 612 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 LRRN4Q8WUT4 740 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 PIK3R5Q8WYR1 880 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 WASF1Q92558 559 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 NKD2Q969F2 451 aaPredicted RBP6.4□□□□□ -1.38
USP3-215ENST00000559771 PRIMPOLQ96LW4 560 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 RTP3Q9BQQ7 232 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 TTPALQ9BTX7 342 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 POLR3CQ9BUI4 534 aaPredicted RBP6.4□□□□□ -1.38
USP3-215ENST00000559771 KIFC3Q9BVG8 833 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 TBC1D17Q9HA65 648 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 TUFT1Q9NNX1 390 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 SLC2A4RGQ9NR83 387 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP3-215ENST00000559771 PRMT7Q9NVM4 692 aaPredicted RBP6.4□□□□□ -1.38
USP3-215ENST00000559771 HCFC1R1Q9NWW0 138 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 CA14Q9ULX7 337 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 PCDHGC4Q9Y5F7 938 aa6.4□□□□□ -1.38
USP3-215ENST00000559771 GVINP1Q7Z2Y8 2422 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 PDCD11Q14690 1871 aaKnown RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 MIA3Q5JRA6 1907 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ELOA3CA0A087WX78 387 aaPredicted RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 LRRIQ4A6NIV6 560 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ELOA3DA6NLF2 546 aaPredicted RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 ACKR2O00590 384 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ABLIM1O14639 778 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 TADA2AO75478 443 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 DCNP07585 359 aaKnown RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 CYP11B2P19099 503 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ATP2B1P20020 1258 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 CD33P20138 364 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 RPA1P27694 616 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 MCM7P33993 719 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 CLCNKBP51801 687 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 STARD6P59095 220 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 GPC5P78333 572 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 GUCY1B3Q02153 619 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 CENPCQ03188 943 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 TNP2Q05952 138 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 RAB33AQ14088 237 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ANKRD1Q15327 319 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 PSMD5Q16401 504 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ELOA3BQ3SY89 546 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 C4orf17Q53FE4 359 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 XKR4Q5GH76 650 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ZNF468Q5VIY5 522 aaPredicted RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 FAM171A1Q5VUB5 890 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 PHLDB3Q6NSJ2 640 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 GET4Q7L5D6 327 aaPredicted RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 DAW1Q8N136 415 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ADSSL1Q8N142 457 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 TMEM130Q8N3G9 435 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 CEP120Q8N960 986 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 MCPH1Q8NEM0 835 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ELOA3Q8NG57 546 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 STAMQ92783 540 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 FGF13Q92913 245 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 NXPE3Q969Y0 559 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 PPP1R10Q96QC0 940 aaKnown RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 DDX23Q9BUQ8 820 aaKnown RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 FOXQ1Q9C009 403 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 TRIM6Q9C030 488 aaPredicted RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 PTPRHQ9HD43 1115 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 ARHGEF3Q9NR81 526 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.39□□□□□ -1.39
USP3-215ENST00000559771 DNMT3BQ9UBC3 853 aaKnown RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 DPP7Q9UHL4 492 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 FBXL21Q9UKT6 434 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 MTF2Q9Y483 593 aaPredicted RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 R4GN57 208 aa6.39□□□□□ -1.39
USP3-215ENST00000559771 SF3B1O75533 1304 aaKnown RBP eCLIP6.39□□□□□ -1.392e-6■■■■■ 215.4
USP3-215ENST00000559771 RIF1Q5UIP0 2472 aaKnown RBP6.39□□□□□ -1.39
USP3-215ENST00000559771 FAM186AA6NE01 2351 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 CACNA1AO00555 2505 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 TMEM189-UBE2V1I3L0A0 370 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 I3L4J1 428 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 N4BP3O15049 544 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 CCL16O15467 120 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 TRAK2O60296 914 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 TBC1D4O60343 1298 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 IL2RAP01589 272 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 PRKCBP05771 671 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 THP07101 528 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 C8AP07357 584 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 POU2F2P09086 479 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 HNRNPA1P09651 372 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP3-215ENST00000559771 SP9P0CG40 484 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 TKTP29401 623 aaKnown RBP6.38□□□□□ -1.39
USP3-215ENST00000559771 HOXA9P31269 272 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 OR1D2P34982 312 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 NAMPTP43490 491 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 BRCC3P46736 316 aa6.38□□□□□ -1.39
USP3-215ENST00000559771 SCTRP47872 440 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms