RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 E9PLN8 166 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 SUN1O94901 812 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 LMNAP02545 664 aaKnown RBP4.75□□□□□ -1.65
VPS13C-207ENST00000558919 GJB1P08034 283 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 RARBP10826 455 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 HSPA6P17066 643 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 MPLP40238 635 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 ANXA11P50995 505 aaKnown RBP4.75□□□□□ -1.65
VPS13C-207ENST00000558919 FPGSQ05932 587 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 DYRK1AQ13627 763 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 GTF2H3Q13889 308 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 SMN1Q16637 294 aaKnown RBP4.75□□□□□ -1.65
VPS13C-207ENST00000558919 ODR4Q5SWX8 454 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 TMPRSS9Q7Z410 1059 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 GPR150Q8NGU9 434 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 PTCD3Q96EY7 689 aaKnown RBP4.75□□□□□ -1.65
VPS13C-207ENST00000558919 CDK5RAP3Q96JB5 506 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 TRIB1Q96RU8 372 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 SMOQ99835 787 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 VKORC1Q9BQB6 163 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 NMRK2Q9NPI5 230 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 CASS4Q9NQ75 786 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 INTS13Q9NVM9 706 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 ZIM2Q9NZV7 527 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 C11orf21Q9P2W6 132 aa4.75□□□□□ -1.65
VPS13C-207ENST00000558919 ZNF785A8K8V0 405 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 SUV39H1O43463 412 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 MATN4O95460 622 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 U2AF1L5P0DN76 240 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 SRGNP10124 158 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 LPOP22079 712 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 ADRA1BP35368 520 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 PSMC1P62191 440 aaKnown RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 U2AF1Q01081 240 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 TCF15Q12870 199 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 HABP2Q14520 560 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 HLXQ14774 488 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 KRTAP15-1Q3LI76 137 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 CCDC157Q569K6 752 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 TAPT1Q6NXT6 567 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 Q6ZNX1 250 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 MICALCLQ6ZW33 695 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 GRAMD1CQ8IYS0 662 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 SLC44A3Q8N4M1 653 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 POC1BQ8TC44 478 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 SSH3Q8TE77 659 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 DIS3LQ8TF46 1054 aaKnown RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 DDX17Q92841 729 aaKnown RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 LRIG1Q96JA1 1093 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 CNPPD1Q9BV87 410 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 KCTD5Q9NXV2 234 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 STXBP5LQ9Y2K9 1186 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 THRAP3Q9Y2W1 955 aaKnown RBP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS13C-207ENST00000558919 NR2E3Q9Y5X4 410 aa4.74□□□□□ -1.65
VPS13C-207ENST00000558919 SPATA31A3Q5VYP0 1347 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 H3BUI4 141 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 POLRMTO00411 1230 aaKnown RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 TOR1BO14657 336 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 AP1G1O43747 822 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 SOAT2O75908 522 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 GNAI2P04899 355 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 ALDH2P05091 517 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 TYRP1P17643 537 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 ZNF135P52742 658 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 ZNF267Q14586 743 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 PLS1Q14651 629 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 ERCC6LQ2NKX8 1250 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 CRB2Q5IJ48 1285 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 EMC10Q5UCC4 262 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 OLFML1Q6UWY5 402 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 B3GNT9Q6UX72 402 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 PPP1R3BQ86XI6 285 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 TPH2Q8IWU9 490 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 ANKRD13AQ8IZ07 590 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 SH2D3CQ8N5H7 860 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 NSUN7Q8NE18 718 aaKnown RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 SLC35G2Q8TBE7 412 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 BRIX1Q8TDN6 353 aaKnown RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 TNPO1Q92973 898 aaKnown RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 TMEM125Q96AQ2 219 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 SLC35A4Q96G79 324 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 CGRRF1Q99675 332 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 AIFM2Q9BRQ8 373 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 SLAMF7Q9NQ25 335 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 ETAA1Q9NY74 926 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 PCDHA1Q9Y5I3 950 aa4.73□□□□□ -1.65
VPS13C-207ENST00000558919 POLR2AP24928 1970 aaKnown RBP4.73□□□□□ -1.65
VPS13C-207ENST00000558919 H3BML4 177 aa4.72□□□□□ -1.65
VPS13C-207ENST00000558919 PROM1O43490 865 aa4.72□□□□□ -1.65
VPS13C-207ENST00000558919 S100BP04271 92 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-207ENST00000558919 GATA3P23771 443 aa4.72□□□□□ -1.65
VPS13C-207ENST00000558919 SF3B3Q15393 1217 aaKnown RBP4.72□□□□□ -1.65
VPS13C-207ENST00000558919 NFE2Q16621 373 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-207ENST00000558919 CD300EQ496F6 205 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-207ENST00000558919 PREPLQ4J6C6 727 aaPredicted RBP4.72□□□□□ -1.65
VPS13C-207ENST00000558919 CXorf57Q6NSI4 855 aaKnown RBP4.72□□□□□ -1.65
VPS13C-207ENST00000558919 VWA1Q6PCB0 445 aa4.72□□□□□ -1.65
VPS13C-207ENST00000558919 DENND1CQ8IV53 801 aa4.72□□□□□ -1.65
VPS13C-207ENST00000558919 ADGRG5Q8IZF4 528 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms