RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 LCE1AQ5T7P2 110 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 MORN5Q5VZ52 161 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 SLC9A4Q6AI14 798 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 TAPT1Q6NXT6 567 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 GADL1Q6ZQY3 521 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 ZNF365Q70YC5 407 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 PPM1NQ8N819 430 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 SLC17A8Q8NDX2 589 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 IL17RDQ8NFM7 739 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 NRG4Q8WWG1 115 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 HDAC10Q969S8 669 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 KLHL32Q96NJ5 620 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 BRIP1Q9BX63 1249 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 TPSD1Q9BZJ3 242 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 BHMT2Q9H2M3 363 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 ADAM21Q9UKJ8 722 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 PCDHB1Q9Y5F3 818 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 ZNF521Q96K83 1311 aa3.66□□□□□ -1.82
VPS13C-205ENST00000558088 TARM1B6A8C7 271 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 F5H697 171 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 SLC43A1O75387 559 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 NXPH3O95157 252 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 ANXA1P04083 346 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 RPLP2P05387 115 aaKnown RBP3.65□□□□□ -1.83
VPS13C-205ENST00000558088 NDUFB7P17568 137 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 AGXTP21549 392 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 DRD4P21917 467 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 EPHB2P29323 1055 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 PLCD1P51178 756 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 POU6F2P78424 691 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-205ENST00000558088 MC2RQ01718 297 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 RAB39AQ14964 217 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 ETFDHQ16134 617 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 SLC44A4Q53GD3 710 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 TEDDM1Q5T9Z0 273 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 CEP85Q6P2H3 762 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF782Q6ZMW2 699 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-205ENST00000558088 NEK8Q86SG6 692 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 SPATS2Q86XZ4 545 aaKnown RBP3.65□□□□□ -1.83
VPS13C-205ENST00000558088 DCBLD1Q8N8Z6 715 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 NSUN7Q8NE18 718 aaKnown RBP3.65□□□□□ -1.83
VPS13C-205ENST00000558088 FKBP10Q96AY3 582 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 SLC2A13Q96QE2 648 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 TRIB1Q96RU8 372 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 KRTAP1-5Q9BYS1 174 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 MAN1C1Q9NR34 630 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 EHD3Q9NZN3 535 aa3.65□□□□□ -1.83
VPS13C-205ENST00000558088 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.65□□□□□ -1.83
VPS13C-205ENST00000558088 SETD1BQ9UPS6 1966 aaKnown RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 WDR27A2RRH5 827 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 POLRMTO00411 1230 aaKnown RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 PRKD3O94806 890 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 ZFXP17010 805 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 WASP42768 502 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 NDUFV1P49821 464 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 SSBP2P81877 361 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 TARDBPQ13148 414 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 BMPR2Q13873 1038 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 PPP4R3AQ6IN85 833 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 C11orf87Q6NUJ2 197 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 SLC29A4Q7RTT9 530 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF551Q7Z340 670 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF804AQ7Z570 1209 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 YTHDF3Q7Z739 585 aaKnown RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 FAM9AQ8IZU1 332 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 AFAP1L2Q8N4X5 818 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 TMIEQ8NEW7 156 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 RAB24Q969Q5 203 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 ZNF277Q9NRM2 450 aaPredicted RBP3.64□□□□□ -1.83
VPS13C-205ENST00000558088 SPATA31A3Q5VYP0 1347 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 ADGRA2Q96PE1 1338 aa3.64□□□□□ -1.83
VPS13C-205ENST00000558088 KAT6AQ92794 2004 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 TP73O15350 636 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 KCNAB3O43448 404 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 SGTAO43765 313 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 SOAT2O75908 522 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 JTBO76095 146 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 RHOP08100 348 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 GNAI3P08754 354 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 SBK3P0C264 359 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 CBSLP0DN79 551 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 ITGALP20701 1170 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 CNGA1P29973 690 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 CBSP35520 551 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 HNRNPMP52272 730 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS13C-205ENST00000558088 GNAI1P63096 354 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 TFF2Q03403 129 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 KLF9Q13886 244 aaPredicted RBP3.63□□□□□ -1.83
VPS13C-205ENST00000558088 WDR66Q8TBY9 1149 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 IFI44Q8TCB0 444 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 ATRIPQ8WXE1 791 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 ACTRT3Q9BYD9 372 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 SIK2Q9H0K1 926 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 GNL3LQ9NVN8 582 aaKnown RBP3.63□□□□□ -1.83
VPS13C-205ENST00000558088 SH3BP4Q9P0V3 963 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 BTBD3Q9Y2F9 522 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 PCDHA13Q9Y5I0 950 aa3.63□□□□□ -1.83
VPS13C-205ENST00000558088 VWC2LB2RUY7 222 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 PPP6CO00743 305 aa3.62□□□□□ -1.83
VPS13C-205ENST00000558088 GPR39O43194 453 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms