RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 USP7Q93009 1102 aa4.68□□□□□ -1.66
SCFD1-218ENST00000556256 HMCESQ96FZ2 354 aa4.68□□□□□ -1.66
SCFD1-218ENST00000556256 PBKQ96KB5 322 aa4.68□□□□□ -1.66
SCFD1-218ENST00000556256 FANCLQ9NW38 375 aa4.68□□□□□ -1.66
SCFD1-218ENST00000556256 TISP43B9A030 160 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 RHOP08100 348 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 CFAP52Q8N1V2 620 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 DCBLD1Q8N8Z6 715 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 APPBP2Q92624 585 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 MFSD3Q96ES6 412 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 KLHL32Q96NJ5 620 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 PCDHGA2Q9Y5H1 932 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 NR2E3Q9Y5X4 410 aa4.67□□□□□ -1.66
SCFD1-218ENST00000556256 A0A087X0B3 334 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 CCDC195A0A1B0GUA6 201 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 FAM171A2A8MVW0 826 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 TOR1BO14657 336 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 SBK3P0C264 359 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 EBLN1P0CF75 366 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 SCAND1P57086 179 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 CTXN1P60606 82 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 SRSF2Q01130 221 aaKnown RBP4.66□□□□□ -1.66
SCFD1-218ENST00000556256 LAMB3Q13751 1172 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 DHCR24Q15392 516 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 ATP2B3Q16720 1220 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 ZDHHC17Q8IUH5 632 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 VPS16Q9H269 839 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 IFT22Q9H7X7 185 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 MANSC1Q9H8J5 431 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 SERTAD4Q9NUC0 356 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 PCDHB1Q9Y5F3 818 aa4.66□□□□□ -1.66
SCFD1-218ENST00000556256 ZEB2O60315 1214 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 JTBO76095 146 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 TUBB4AP04350 444 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 CCKARP32238 428 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 MMP13P45452 471 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 ADAMTS15Q8TE58 950 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 FBXO41Q8TF61 875 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 REPS1Q96D71 796 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 ALG8Q9BVK2 526 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 TUBA8Q9NY65 449 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-218ENST00000556256 SH3BP4Q9P0V3 963 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 DKK3Q9UBP4 350 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 DNM3Q9UQ16 869 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 PLAAQ9Y263 795 aa4.65□□□□□ -1.67
SCFD1-218ENST00000556256 PRRT4C9JH25 899 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 E7ENX8 843 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 GRM6O15303 877 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 ZFXP17010 805 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-218ENST00000556256 NPTX2P47972 431 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 ZNF134P52741 427 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 TAP2Q03519 686 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 RABEP1Q15276 862 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 PRAMEF17Q5VTA0 474 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 CEP85Q6P2H3 762 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 KRT73Q86Y46 540 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 DPF2Q92785 391 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 CAMKK2Q96RR4 588 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 TMEM79Q9BSE2 394 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 IMPG2Q9BZV3 1241 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 PRSS22Q9GZN4 317 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 EBF3Q9H4W6 596 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 VTA1Q9NP79 307 aa4.64□□□□□ -1.67
SCFD1-218ENST00000556256 CCDC187A0A096LP49 1063 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 KCNU1A8MYU2 1149 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 FAM163BP0C2L3 166 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 MTHFD1P11586 935 aaKnown RBP4.63□□□□□ -1.67
SCFD1-218ENST00000556256 JUPP14923 745 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 SLC5A3P53794 718 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 CCDC144BQ3MJ40 725 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 FLYWCH1Q4VC44 716 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 PLAC9Q5JTB6 97 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 FAM9AQ8IZU1 332 aaPredicted RBP4.63□□□□□ -1.67
SCFD1-218ENST00000556256 IL17RDQ8NFM7 739 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 TTC1Q99614 292 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 C7orf25Q9BPX7 421 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 EHD3Q9NZN3 535 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 JKAMPQ9P055 326 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 SLC45A2Q9UMX9 530 aa4.63□□□□□ -1.67
SCFD1-218ENST00000556256 A0A0B4J269 797 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 SMIM35A0A1B0GVV1 85 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 PRR23D1E9PI22 279 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-218ENST00000556256 F5H697 171 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 SMIM22K7EJ46 135 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 ZNF213O14771 459 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 PDE8AO60658 829 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 PRR23D2P0DMB1 279 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-218ENST00000556256 PCSK6P29122 969 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 POU6F2P78424 691 aaPredicted RBP4.62□□□□□ -1.67
SCFD1-218ENST00000556256 PIGFQ07326 219 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 TUBB3Q13509 450 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 BMPR2Q13873 1038 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 PABPC1LQ4VXU2 614 aaKnown RBP4.62□□□□□ -1.67
SCFD1-218ENST00000556256 RHOT1Q8IXI2 618 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 SLC17A8Q8NDX2 589 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 TMIEQ8NEW7 156 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 FKBP10Q96AY3 582 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 TPSD1Q9BZJ3 242 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 AMBRA1Q9C0C7 1298 aa4.62□□□□□ -1.67
SCFD1-218ENST00000556256 DNAJC28Q9NX36 388 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms