RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 VKORC1Q9BQB6 163 aa5.42□□□□□ -1.54
SCFD1-217ENST00000555953 USP35Q9P2H5 1018 aa5.42□□□□□ -1.54
SCFD1-217ENST00000555953 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.42□□□□□ -1.54
SCFD1-217ENST00000555953 WNT6Q9Y6F9 365 aa5.42□□□□□ -1.54
SCFD1-217ENST00000555953 AOX1Q06278 1338 aa5.42□□□□□ -1.54
SCFD1-217ENST00000555953 MT-CO1P00395 513 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 SLC16A1P53985 500 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 SOX10P56693 466 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 POU6F2P78424 691 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-217ENST00000555953 PIGFQ07326 219 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 HLXQ14774 488 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-217ENST00000555953 GADL1Q6ZQY3 521 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 B3GALNT2Q8NCR0 500 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 KAT5Q92993 513 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 CLPTM1LQ96KA5 538 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 PUS7LQ9H0K6 701 aaKnown RBP5.41□□□□□ -1.54
SCFD1-217ENST00000555953 MKS1Q9NXB0 559 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 SLC5A4Q9NY91 659 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHB1Q9Y5F3 818 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 ADGRA2Q96PE1 1338 aa5.41□□□□□ -1.54
SCFD1-217ENST00000555953 WDR91A4D1P6 747 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 CCDC154A6NI56 674 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 KRTAP29-1A8MX34 341 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-217ENST00000555953 E7ENX8 843 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHGA12O60330 932 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PRKCGP05129 697 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 RHOP08100 348 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 CELA2AP08217 269 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 NPTX2P47972 431 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 TAP2Q03519 686 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 ITIH3Q06033 890 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 FCRLBQ6BAA4 426 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 RASAL3Q86YV0 1011 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 TRIB1Q96RU8 372 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 HAPLN3Q96S86 360 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 ZNF70Q9UC06 446 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-217ENST00000555953 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHGA9Q9Y5G4 932 aaKnown RBP5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHGA8Q9Y5G5 932 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHGA7Q9Y5G6 932 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHGA6Q9Y5G7 932 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 PCDHGA3Q9Y5H0 932 aa5.4□□□□□ -1.54
SCFD1-217ENST00000555953 ITGB6P18564 788 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 NXPH1P58417 271 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 DDX42Q86XP3 938 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCFD1-217ENST00000555953 FAM9AQ8IZU1 332 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-217ENST00000555953 POC1BQ8TC44 478 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 FAXDC2Q96IV6 333 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 KLC4Q9NSK0 619 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 CALCOCO1Q9P1Z2 691 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 MCM8Q9UJA3 840 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 PRKAB1Q9Y478 270 aa5.39□□□□□ -1.55
SCFD1-217ENST00000555953 URI1O94763 535 aaPredicted RBP5.38□□□□□ -1.55
SCFD1-217ENST00000555953 CLSTN1O94985 981 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 LPOP22079 712 aaPredicted RBP5.38□□□□□ -1.55
SCFD1-217ENST00000555953 KIF23Q02241 960 aaPredicted RBP5.38□□□□□ -1.55
SCFD1-217ENST00000555953 ABCB5Q2M3G0 1257 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 NECAB2Q7Z6G3 386 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 AOPEPQ8N6M6 819 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 PBKQ96KB5 322 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 SMOQ99835 787 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 SERPINB13Q9UIV8 391 aa5.38□□□□□ -1.55
SCFD1-217ENST00000555953 A0A0B4J269 797 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 KLHL33A6NCF5 533 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 GCOM1H8Y6P7 765 aaPredicted RBP5.37□□□□□ -1.55
SCFD1-217ENST00000555953 FZD9O00144 591 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 F2RL2O00254 374 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 POLRMTO00411 1230 aaKnown RBP5.37□□□□□ -1.55
SCFD1-217ENST00000555953 XPOTO43592 962 aaKnown RBP5.37□□□□□ -1.55
SCFD1-217ENST00000555953 ANXA1P04083 346 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 TFF2Q03403 129 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 TUBB3Q13509 450 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 FAM153CQ494X1 144 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 CCDC93Q567U6 631 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 SLC30A10Q6XR72 485 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 NSUN6Q8TEA1 469 aaKnown RBP5.37□□□□□ -1.55
SCFD1-217ENST00000555953 SCAMP4Q969E2 229 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 RFKQ969G6 155 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 COA7Q96BR5 231 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 TEKT5Q96M29 485 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 SMOC2Q9H3U7 446 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 MRPS18AQ9NVS2 196 aaKnown RBP5.37□□□□□ -1.55
SCFD1-217ENST00000555953 NR2E3Q9Y5X4 410 aa5.37□□□□□ -1.55
SCFD1-217ENST00000555953 LINC01548A6NM66 108 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 NT5C1B-RDH14C9J2C7 533 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 TTLL1O95922 423 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 MYBL2P10244 700 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 NR2F6P10588 404 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 MALP21145 153 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 SNAPC2Q13487 334 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 SRSF7Q16629 238 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCFD1-217ENST00000555953 LCE1AQ5T7P2 110 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 KIAA1614Q5VZ46 1190 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 PPP4R3AQ6IN85 833 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 ZNF425Q6IV72 752 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 CAMKK1Q8N5S9 505 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 VRK1Q99986 396 aaPredicted RBP5.36□□□□□ -1.55
SCFD1-217ENST00000555953 ETAA1Q9NY74 926 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 PADI4Q9UM07 663 aa5.36□□□□□ -1.55
SCFD1-217ENST00000555953 SPATA31A3Q5VYP0 1347 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms