RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 PSTPIP1O43586 416 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 PSMA4P25789 261 aaKnown RBP18.33■□□□□ 0.52
SYNE3-204ENST00000555759 RWDD4Q6NW29 188 aaKnown RBP18.33■□□□□ 0.52
SYNE3-204ENST00000555759 KANSL1LA0AUZ9 987 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 USP17L10C9JJH3 530 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 ABLIM1O14639 778 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 SLC4A1P02730 911 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 RFC5P40937 340 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 DMC1Q14565 340 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 MAPK6Q16659 721 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 DOK7Q18PE1 504 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 FAM167AQ96KS9 214 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 HSPBP1Q9NZL4 362 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 EFCAB6Q5THR3 1501 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 CRB1P82279 1406 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 GLRA3O75311 464 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 RASSF9O75901 435 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 KCNA2P16389 499 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 INAQ16352 499 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 PID1Q7Z2X4 250 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 EPS8L2Q9H6S3 715 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 RSAD1Q9HA92 442 aa18.33■□□□□ 0.52
SYNE3-204ENST00000555759 INO80Q9ULG1 1556 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 SESN2P58004 480 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 GJC2Q5T442 439 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 PATL1Q86TB9 770 aaKnown RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 PGBD4Q96DM1 585 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 REEP2Q9BRK0 252 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 ZMYND8Q9ULU4 1186 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 CFAP65Q6ZU64 1925 aaKnown RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 TCN1P20061 433 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 EAPPQ56P03 285 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 TRIM69Q86WT6 500 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 GJA3Q9Y6H8 435 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 PSMC5P62195 406 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 NT5DC1Q5TFE4 455 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 THNSL1Q8IYQ7 743 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 TASP1Q9H6P5 420 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 NFIBO00712 420 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 PLEKHA7Q6IQ23 1121 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 MREGQ8N565 214 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 TRIM63Q969Q1 353 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 KLHL11Q9NVR0 708 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 ARHGAP20Q9P2F6 1191 aa18.32■□□□□ 0.52
SYNE3-204ENST00000555759 CAB39Q9Y376 341 aaPredicted RBP18.32■□□□□ 0.52
SYNE3-204ENST00000555759 ABCC3O15438 1527 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 RIPK2O43353 540 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 PYGLP06737 847 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 HADHAP40939 763 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 ADGRF4Q8IZF3 695 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 ZNF280CQ8ND82 737 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 ARHGEF1Q92888 912 aaKnown RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 RBAKQ9NYW8 714 aaPredicted RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 MAD2L2Q9UI95 211 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 TAF6LQ9Y6J9 622 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 EIF2AK2P19525 551 aaKnown RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 STX19Q8N4C7 294 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 RIN3Q8TB24 985 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 AGAP11Q8TF27 550 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 PPP1R36Q96LQ0 422 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 C8orf37Q96NL8 207 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 ILKAPQ9H0C8 392 aaPredicted RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 RPL26L1Q9UNX3 145 aaKnown RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 COMMD3-BMI1R4GMX3 469 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 CDC42BPBQ9Y5S2 1711 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 NPHP3-ACAD11A0A0J9YXS1 232 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 RALAP11233 206 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 PDAP1Q13442 181 aaKnown RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 TTMPQ5BVD1 217 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 C1orf131Q8NDD1 294 aaKnown RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 CPA5Q8WXQ8 436 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 NUP93Q8N1F7 819 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 FAM81AQ8TBF8 368 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 THAP2Q9H0W7 228 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 ATAD3AQ9NVI7 634 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.31■□□□□ 0.52
SYNE3-204ENST00000555759 MCM8Q9UJA3 840 aa18.31■□□□□ 0.52
SYNE3-204ENST00000555759 SCARF1Q14162 830 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 SLC27A3Q5K4L6 730 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 MAGEC3Q8TD91 643 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 MPP6Q9NZW5 540 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 DCDC2Q9UHG0 476 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 KCNA1Q09470 495 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 QRICH1Q2TAL8 776 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 IYDQ6PHW0 289 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 B3GNT6Q6ZMB0 384 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 NCAPG2Q86XI2 1143 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 IFT43Q96FT9 208 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 PAGR1Q9BTK6 254 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 AGO2Q9UKV8 859 aaKnown RBP18.3■□□□□ 0.52
SYNE3-204ENST00000555759 NEO1Q92859 1461 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 POLBP06746 335 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 STIP1P31948 543 aaKnown RBP18.3■□□□□ 0.52
SYNE3-204ENST00000555759 SFSWAPQ12872 951 aaKnown RBP18.3■□□□□ 0.52
SYNE3-204ENST00000555759 USP10Q14694 798 aaKnown RBP18.3■□□□□ 0.52
SYNE3-204ENST00000555759 PPHLN1Q8NEY8 458 aaKnown RBP18.3■□□□□ 0.52
SYNE3-204ENST00000555759 WDR60Q8WVS4 1066 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 ATXN7L3BQ96GX2 97 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 ISCA1Q9BUE6 129 aa18.3■□□□□ 0.52
SYNE3-204ENST00000555759 C2orf40Q9H1Z8 148 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms