RNA–Protein interactions for RNA: ENST00000555252.5

MTHFD1-210, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 1 (best)

Gene MTHFD1, Length 2,053 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-210ENST00000555252 SYT15Q9BQS2 421 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 MAF1Q9H063 256 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 MMADHCQ9H3L0 296 aaPredicted RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 RAVER2Q9HCJ3 691 aaKnown RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 PDP2Q9P2J9 529 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 KCNG1Q9UIX4 513 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 PTPN22Q9Y2R2 807 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 RASA4BC9J798 803 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 RASA4O43374 803 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 T-ENOLP0DO92 83 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 ITGA8P53708 1063 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 PEX3P56589 373 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 WDR4P57081 412 aaKnown RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 RPS6P62753 249 aaKnown RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 XKR9Q5GH70 373 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 C1orf220Q5T0J3 134 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 KRT39Q6A163 491 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 OR52E8Q6IFG1 317 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 NLRX1Q86UT6 975 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 TRABD2AQ86V40 505 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 PALB2Q86YC2 1186 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 MAP4K3Q8IVH8 894 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 CDAN1Q8IWY9 1227 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 SRRM1Q8IYB3 904 aaKnown RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 CPXCR1Q8N123 301 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 CCDC89Q8N998 374 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 ATL2Q8NHH9 583 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 ZNF564Q8TBZ8 553 aaPredicted RBP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 KIFAP3Q92845 792 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 CFAP57Q96MR6 1250 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 TAAR1Q96RJ0 339 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 MYOZ2Q9NPC6 264 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 HAO1Q9UJM8 370 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 ANAPC5Q9UJX4 755 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 TBX20Q9UMR3 447 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 COQ4Q9Y3A0 265 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 C2CD2Q9Y426 696 aa11.32□□□□□ -0.6
MTHFD1-210ENST00000555252 MAGEA13PA6NCF6 341 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SIGLEC16A6NMB1 481 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SLC16A4O15374 487 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CCDC22O60826 627 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 AP1G2O75843 785 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 GM2AP17900 193 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 EIF2AK2P19525 551 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 TARSP26639 723 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CHKAP35790 457 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 PTP4A2Q12974 167 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 DMP1Q13316 513 aaPredicted RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 KPNB1Q14974 876 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 KYNUQ16719 465 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 GNPTABQ3T906 1256 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 ZC3H12AQ5D1E8 599 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 FAM102BQ5T8I3 360 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 ARHGEF16Q5VV41 709 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 FYB2Q5VWT5 728 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CIAPIN1Q6FI81 312 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 C4orf50Q6ZRC1 276 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 GPRASP2Q96D09 838 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 RMDN3Q96TC7 470 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 PDCD2LQ9BRP1 358 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 NTPCRQ9BSD7 190 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 TRIM4Q9C037 500 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 TMEM117Q9H0C3 514 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 TMEM8AQ9HCN3 771 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CYLDQ9NQC7 956 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 PXMP2Q9NR77 195 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 ZMYND8Q9ULU4 1186 aaPredicted RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 COL4A5P29400 1685 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SPDYE5A6NIY4 337 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 H0YCG3 227 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 MYCLP12524 364 aaPredicted RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CCND2P30279 289 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SLC1A1P43005 524 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 KCNJ1P48048 391 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 GPC3P51654 580 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 RTP1P59025 263 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CXCL9Q07325 125 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 CUL3Q13618 768 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SNRNP35Q16560 246 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 ENOSF1Q7L5Y1 443 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 PPFIBP2Q8ND30 876 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SLC20A1Q8WUM9 679 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 SHC3Q92529 594 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 ITFG2Q969R8 447 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 NR1H4Q96RI1 486 aaPredicted RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 DENND2DQ9H6A0 471 aaPredicted RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 NMRK1Q9NWW6 199 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 NOCTQ9UK39 431 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 PCDHA10Q9Y5I2 948 aa11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.31□□□□□ -0.6
MTHFD1-210ENST00000555252 TCRBV7S2A1N4TA0A589 114 aa11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 TMEM110-MUSTN1A8MSY1 372 aa11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 A8MXQ7 604 aa11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 ZC3H11AO75152 810 aaKnown RBP eCLIP11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 RPS12P25398 132 aaKnown RBP11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 EPHB2P29323 1055 aa11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 CDR2Q01850 454 aa11.3□□□□□ -0.6
MTHFD1-210ENST00000555252 SPP2Q13103 211 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms