RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 MKNK1Q9BUB5 465 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 MAN1C1Q9NR34 630 aa15.2■□□□□ 0.02
PTCH1-226ENST00000553011 R3HCC1Q9Y3T6 440 aaKnown RBP15.2■□□□□ 0.02
PTCH1-226ENST00000553011 XIRP2A4UGR9 3374 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 GRXCR2A6NFK2 248 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 H7C4K7 107 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 PHACTR2O75167 634 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 OAZ2O95190 189 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 C4BPAP04003 597 aaKnown RBP15.19■□□□□ 0.02
PTCH1-226ENST00000553011 CYP11A1P05108 521 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 EPB41P11171 864 aaKnown RBP15.19■□□□□ 0.02
PTCH1-226ENST00000553011 KRT13P13646 458 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 ARPP19P56211 112 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 ROR1Q01973 937 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 BIRC3Q13489 604 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 RAB33AQ14088 237 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 WSCD1Q658N2 575 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 OVOS1Q6IE37 1185 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 PTCRAQ6ISU1 281 aaPredicted RBP15.19■□□□□ 0.02
PTCH1-226ENST00000553011 SLC8B1Q6J4K2 584 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 SMRP1Q8NCR6 262 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 DZANK1Q9NVP4 752 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 CDH22Q9UJ99 828 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 SNX9Q9Y5X1 595 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 BDP1A6H8Y1 2624 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 A0A0C4DFX4 3053 aa15.19■□□□□ 0.02
PTCH1-226ENST00000553011 C5orf42Q9H799 3197 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 BICDL2A1A5D9 508 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 ARHGEF37A1IGU5 675 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 WDR27A2RRH5 827 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 SLC16A3O15427 465 aaKnown RBP15.18■□□□□ 0.02
PTCH1-226ENST00000553011 MBTPS2O43462 519 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 VNN1O95497 513 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 OR4Q2P0C623 313 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 BMP1P13497 986 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 IL9P15248 144 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 HOXB8P17481 243 aaPredicted RBP15.18■□□□□ 0.02
PTCH1-226ENST00000553011 GCLMP48507 274 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 AP3M2P53677 418 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 MYL6P60660 151 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 PPP3CAQ08209 521 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 MYO1EQ12965 1108 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 SMAD4Q13485 552 aaKnown RBP15.18■□□□□ 0.02
PTCH1-226ENST00000553011 TRPC3Q13507 836 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 DPCR1Q3MIW9 517 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 RARS2Q5T160 578 aaKnown RBP15.18■□□□□ 0.02
PTCH1-226ENST00000553011 SV2AQ7L0J3 742 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 KREMEN2Q8NCW0 462 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 ELMO3Q96BJ8 720 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 MED15Q96RN5 788 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 RTP3Q9BQQ7 232 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 S1PR5Q9H228 398 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 MMRN2Q9H8L6 949 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 GDAP2Q9NXN4 497 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 FBXW11Q9UKB1 542 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 L1RE1Q9UN81 338 aa15.18■□□□□ 0.02
PTCH1-226ENST00000553011 DENND4AQ7Z401 1863 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 SPDYE4A6NLX3 237 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 IKBKBO14920 756 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 HUS1O60921 280 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 RFPL2O75678 378 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 C1RP00736 705 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 WEE2P0C1S8 567 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 NLRP12P59046 1061 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 MCCD1P59942 119 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-226ENST00000553011 ZACNQ401N2 412 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 FOXR2Q6PJQ5 311 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 C15orf39Q6ZRI6 1047 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 RBM43Q6ZSC3 357 aaKnown RBP15.17■□□□□ 0.02
PTCH1-226ENST00000553011 OSTM1Q86WC4 334 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 METTL23Q86XA0 190 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 PDCL2Q8N4E4 241 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 MLKLQ8NB16 471 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 OR10T2Q8NGX3 314 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 CEP63Q96MT8 703 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 TMEM209Q96SK2 561 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 XYLT2Q9H1B5 865 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 DSEQ9UL01 958 aa15.17■□□□□ 0.02
PTCH1-226ENST00000553011 USP15Q9Y4E8 981 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-226ENST00000553011 DOCK8Q8NF50 2099 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 NOTCH4Q99466 2003 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 OR6C75A6NL08 312 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 ABLIM3O94929 683 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 HLA-DRAP01903 254 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 CPB1P15086 417 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 ENPEPQ07075 957 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 NCOA4Q13772 614 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 SOWAHAQ2M3V2 549 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 TJAP1Q5JTD0 557 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 TMC5Q6UXY8 1006 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 FILIP1Q7Z7B0 1213 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 ZNF461Q8TAF7 563 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 HDAC7Q8WUI4 952 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 PLEKHA4Q9H4M7 779 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 SFXN1Q9H9B4 322 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 TMEM63CQ9P1W3 806 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 ARMCX3Q9UH62 379 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-226ENST00000553011 RWDD2AQ9UIY3 292 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 MYO10Q9HD67 2058 aa15.16■□□□□ 0.02
PTCH1-226ENST00000553011 HCRTO43612 131 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms