RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 C11orf63Q6NUN7 778 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 TTI2Q6NXR4 508 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 C1orf228Q6PIY5 440 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 BNC2Q6ZN30 1099 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MARK2Q7KZI7 788 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MIGA2Q7L4E1 593 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 CLEC4FQ8N1N0 589 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 FBXO25Q8TCJ0 367 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MPP4Q96JB8 637 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 STARD13Q9Y3M8 1113 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PCDHB2Q9Y5E7 798 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 XPO1O14980 1071 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 ALAS1P13196 640 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 S100A1P23297 94 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PSMA4P25789 261 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 ALDH1B1P30837 517 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 CRKLP46109 303 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 DRG2P55039 364 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 DYNLL1P63167 89 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 KRT76Q01546 638 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 DCLK2Q8N568 766 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PROCA1Q8NCQ7 364 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 JDP2Q8WYK2 163 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 TMEM47Q9BQJ4 181 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 CELF4Q9BZC1 486 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 BRD8Q9H0E9 1235 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 SEPT9Q9UHD8 586 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 STAP1Q9ULZ2 295 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 CAB39Q9Y376 341 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 EMSYQ7Z589 1322 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 M0QZ92 97 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 RPL5P46777 297 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 SARSP49591 514 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 TFAMQ00059 246 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 TMTC4Q5T4D3 741 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MICU2Q8IYU8 434 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 DAGLBQ8NCG7 672 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 RFWD2Q8NHY2 731 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 RSPH1Q8WYR4 309 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 HSPH1Q92598 858 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MSTO1Q9BUK6 570 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 APOL6Q9BWW8 343 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 ATP8B3O60423 1300 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MYL4P12829 197 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PDAP1Q13442 181 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PADI6Q6TGC4 694 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 AGAP11Q8TF27 550 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 NMD3Q96D46 503 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 CDC42EP4Q9H3Q1 356 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 RSAD1Q9HA92 442 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PLGRKTQ9HBL7 147 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 RSL24D1Q9UHA3 163 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 APPL1Q9UKG1 709 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 SESN1Q9Y6P5 492 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 SPATA31A5Q5VU36 1347 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MROH7Q68CQ1 1323 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 SPATA31A7Q8IWB4 1347 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 CDK8P49336 464 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 ITGB3BPQ13352 177 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 RASA2Q15283 850 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 FOXR1Q6PIV2 292 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 TMEM270Q6UE05 265 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 PI16Q6UXB8 463 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 PHACTR1Q9C0D0 580 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 HMG20AQ9NP66 347 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 CIDEBQ9UHD4 219 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 PNMA8CA0A1B0GUJ8 204 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 P4HBP07237 508 aaKnown RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 MTFR1Q15390 333 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 OASLQ15646 514 aaKnown RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 CENPPQ6IPU0 288 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 ARHGEF1Q92888 912 aaKnown RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 RMDN1Q96DB5 314 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 A0A087X0T9 212 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 BCL10O95999 233 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 FAM228BP0C875 321 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 PRKAA2P54646 552 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 FOXP4Q8IVH2 680 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 GALNT4Q8N4A0 578 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 CCDC126Q96EE4 140 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 ILKAPQ9H0C8 392 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 QTRT2Q9H974 415 aaKnown RBP13.38□□□□□ -0.27
PTCH1-212ENST00000546744 SHOC2Q9UQ13 582 aa13.38□□□□□ -0.27
PTCH1-212ENST00000546744 SALL3Q9BXA9 1300 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 APOL1O14791 398 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 SNX2O60749 519 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 USP1O94782 785 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 OCM2P0CE71 109 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 OCMP0CE72 109 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-212ENST00000546744 PMS1P54277 932 aaKnown RBP13.37□□□□□ -0.27
PTCH1-212ENST00000546744 NR1H2P55055 460 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 CREG2Q8IUH2 290 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 EPS8L3Q8TE67 593 aaKnown RBP13.37□□□□□ -0.27
PTCH1-212ENST00000546744 CYGBQ8WWM9 190 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 RMND5BQ96G75 393 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-212ENST00000546744 TRIM62Q9BVG3 475 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 TIMMDC1Q9NPL8 285 aa13.37□□□□□ -0.27
PTCH1-212ENST00000546744 METTL5Q9NRN9 209 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms