RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 IQCA1LA6NCM1 817 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 DAB2IPQ5VWQ8 1189 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 SPATA2LQ8IUW3 424 aaPredicted RBP13.12□□□□□ -0.31
COL4A6-209ENST00000545689 KCND1Q9NSA2 647 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 KIAA1257Q9ULG3 409 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 GRID1Q9ULK0 1009 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 SNX9Q9Y5X1 595 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 APRTP07741 180 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 FDFT1P37268 417 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 HERVK_113P62684 666 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 PLA2G4FQ68DD2 849 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 GPAT2Q6NUI2 795 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 EP400NLQ6ZTU2 488 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 ATPAF2Q8N5M1 289 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 RIOX1Q9H6W3 641 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 ARHGAP26Q9UNA1 814 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 GIT2Q14161 759 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 BOLA3Q53S33 107 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 PPME1Q9Y570 386 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 POLBP06746 335 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 SARSP49591 514 aaKnown RBP13.12□□□□□ -0.31
COL4A6-209ENST00000545689 CORO7P57737 925 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 RAD51Q06609 339 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 RBBP7Q16576 425 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 CCNJLQ8IV13 435 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 CDC26Q8NHZ8 85 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 C9orf72Q96LT7 481 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 ZDHHC15Q96MV8 337 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 PNKPQ96T60 521 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 SEMA6BQ9H3T3 888 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 EHD2Q9NZN4 543 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 HACD3Q9P035 362 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL4A6-209ENST00000545689 RRN3P2A6NIE6 340 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 WEE2P0C1S8 567 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 SNX17Q15036 470 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 OR6P1Q8NGX9 317 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 THAP2Q9H0W7 228 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 NPHS2Q9NP85 383 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 ERAP1Q9NZ08 941 aa13.12□□□□□ -0.31
COL4A6-209ENST00000545689 NNMTP40261 264 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 ALDH18A1P54886 795 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 SMARCAL1Q9NZC9 954 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 H2AFYO75367 372 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 MED24O75448 989 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 APOA4P06727 396 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 PDHA1P08559 390 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 SESN2P58004 480 aaPredicted RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 RTFDC1Q9BY42 306 aaPredicted RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 TMBIM4Q9HC24 238 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CNOT7Q9UIV1 285 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 TRAF3IP3Q9Y228 551 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 ATP9BO43861 1147 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 MEI1Q5TIA1 1274 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CAPRIN2Q6IMN6 1127 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 C11orf63Q6NUN7 778 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 OR2W6PQ8NHA6 318 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 SPATA18Q8TC71 538 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CATSPERBQ9H7T0 1116 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 TJP2Q9UDY2 1190 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CDY2AQ9Y6F7 541 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CDY1Q9Y6F8 540 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 SYCE1LA8MT33 242 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 MYL2P10916 166 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 SSTR3P32745 418 aaPredicted RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 MCL1Q07820 350 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 VEPH1Q14D04 833 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 PKN1Q16512 942 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 EFL1Q7Z2Z2 1120 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 LCA5Q86VQ0 697 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 APBB2Q92870 758 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CELF4Q9BZC1 486 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 MANSC1Q9H8J5 431 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 TNPO2O14787 897 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 ENO1P06733 434 aaKnown RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CHRNA5P30532 468 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 NAMPTP43490 491 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 CASP7P55210 303 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 SNAPC2Q13487 334 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 C3orf62Q6ZUJ4 267 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 APLFQ8IW19 511 aaPredicted RBP13.11□□□□□ -0.31
COL4A6-209ENST00000545689 OLFML3Q9NRN5 406 aa13.11□□□□□ -0.31
COL4A6-209ENST00000545689 A0A087X0T9 212 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 FAM228BP0C875 321 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 KRT4P19013 534 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 TMCO4Q5TGY1 634 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 LRRC8EQ6NSJ5 796 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 DDIASQ8IXT1 998 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 SCFD2Q8WU76 684 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 EGFL8Q99944 293 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 CYP4F11Q9HBI6 524 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 POLRMTO00411 1230 aaKnown RBP13.1□□□□□ -0.31
COL4A6-209ENST00000545689 ANGPT2O15123 496 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 CST8O60676 142 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 LSM8O95777 96 aaKnown RBP13.1□□□□□ -0.31
COL4A6-209ENST00000545689 HADHAP40939 763 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 KYNUQ16719 465 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 ARHGAP23Q9P227 1491 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 TMED1Q13445 227 aa13.1□□□□□ -0.31
COL4A6-209ENST00000545689 SLC29A2Q14542 456 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms