RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 CTNNBL1Q8WYA6 563 aaPredicted RBP15.28■□□□□ 0.04
VPS33A-209ENST00000544349 XYLT2Q9H1B5 865 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 PCDHB4Q9Y5E5 795 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 PCDHB2Q9Y5E7 798 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 RPS6KA5O75582 802 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 FTLP02792 175 aaPredicted RBP15.28■□□□□ 0.04
VPS33A-209ENST00000544349 ITGA4P13612 1032 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 AXLP30530 894 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 TNNC1P63316 161 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 NNTQ13423 1086 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 TMEM270Q6UE05 265 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 DAAM2Q86T65 1068 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 ZNF677Q86XU0 584 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 C1orf127Q8N9H9 656 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 FAM76AQ8TAV0 307 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 ACTRT1Q8TDG2 376 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 PIK3R5Q8WYR1 880 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 NIF3L1Q9GZT8 377 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 THAP2Q9H0W7 228 aa15.28■□□□□ 0.04
VPS33A-209ENST00000544349 PGRMC1O00264 195 aaKnown RBP15.27■□□□□ 0.04
VPS33A-209ENST00000544349 BUB1BO60566 1050 aaPredicted RBP15.27■□□□□ 0.04
VPS33A-209ENST00000544349 CALCAP01258 141 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 HMGCRP04035 888 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 VEGFBP49765 207 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 ZNF699Q32M78 642 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 MAP3K21Q5TCX8 1036 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 CD302Q8IX05 232 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 GOLGA6L1Q8N7Z2 621 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 SLC35G2Q8TBE7 412 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 RFFLQ8WZ73 363 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 PBKQ96KB5 322 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 EIF2AQ9BY44 585 aaKnown RBP15.27■□□□□ 0.04
VPS33A-209ENST00000544349 DDX47Q9H0S4 455 aaKnown RBP15.27■□□□□ 0.04
VPS33A-209ENST00000544349 LCMT1Q9UIC8 334 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 SIX4Q9UIU6 781 aa15.27■□□□□ 0.04
VPS33A-209ENST00000544349 ASGR1P07306 291 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 KRT19P08727 400 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 CST5P28325 142 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 TMEM132DQ14C87 1099 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 KCNA10Q16322 511 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 DCAF12L1Q5VU92 463 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 CCSAPQ6IQ19 270 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 GDF6Q6KF10 455 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 NT5DC4Q86YG4 428 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 RBBP8NLQ8NC74 664 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 CXorf38Q8TB03 319 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 CELF4Q9BZC1 486 aaKnown RBP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 NEUROG2Q9H2A3 272 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 SNTG2Q9NY99 539 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 C2CD2Q9Y426 696 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 SHOX2O60902 331 aaPredicted RBP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 HSF2BPO75031 334 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 KRT14P02533 472 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 DDX42Q86XP3 938 aaKnown RBP eCLIP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 TMEM130Q8N3G9 435 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 SH2D3CQ8N5H7 860 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 HES6Q96HZ4 224 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.26■□□□□ 0.03
VPS33A-209ENST00000544349 COG5Q9UP83 839 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 TRIP11Q15643 1979 aa15.26■□□□□ 0.03
VPS33A-209ENST00000544349 GNRH1P01148 92 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ITGB3P05106 788 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ASPAP45381 313 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ZNF132P52740 706 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 GPC5P78333 572 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 FAM47CQ5HY64 1035 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 SMYD5Q6GMV2 418 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 RASGEF1CQ8N431 466 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 RAET1EQ8TD07 263 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 PXYLP1Q8TE99 480 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 PLEKHA5Q9HAU0 1116 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 PIN4Q9Y237 131 aaKnown RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 RALGAPA2Q2PPJ7 1873 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 GRIN2DO15399 1336 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 BHMG1C9JSJ3 638 aaPredicted RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 GOLGA8KD6RF30 607 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 DDX3YO15523 660 aaKnown RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 MYCNP04198 464 aaPredicted RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 UNGP13051 313 aaPredicted RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 GNA15P30679 374 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ATICP31939 592 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 MRPS6P82932 125 aaKnown RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 TCEAL1Q15170 157 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 CLEC16AQ2KHT3 1053 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 DNAJC21Q5F1R6 531 aaKnown RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ZNF667Q5HYK9 610 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ALS2CLQ60I27 953 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 ACAD10Q6JQN1 1059 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 SESTD1Q86VW0 696 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 RHOT2Q8IXI1 618 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 MREGQ8N565 214 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 FAXDC2Q96IV6 333 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 CISHQ9NSE2 258 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 DDX20Q9UHI6 824 aaKnown RBP15.25■□□□□ 0.03
VPS33A-209ENST00000544349 NR2E1Q9Y466 385 aa15.25■□□□□ 0.03
VPS33A-209ENST00000544349 THSD7BQ9C0I4 1608 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 TTC19Q6DKK2 380 aaPredicted RBP15.24■□□□□ 0.03
VPS33A-209ENST00000544349 RSPH3Q86UC2 560 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 IQCKQ8N0W5 287 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 PCSK9Q8NBP7 692 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms