RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 CAGE1Q8TC20 777 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 RHOXF2Q9BQY4 288 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 C11orf70Q9BRQ4 267 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 VRTNQ9H8Y1 702 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 GOLGA2P5Q9HBQ8 144 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 CNTN3Q9P232 1028 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 CNOT8Q9UFF9 292 aaKnown RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 GTF3C4Q9UKN8 822 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 HCRTO43612 131 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 MTA2O94776 668 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 AFF1P51825 1210 aaKnown RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ACLYP53396 1101 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 PTGISQ16647 500 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 KCTD19Q17RG1 926 aaPredicted RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 TRIM71Q2Q1W2 868 aaKnown RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 DENND1BQ6P3S1 775 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF572Q7Z3I7 529 aaPredicted RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 RHOT2Q8IXI1 618 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 SLC4A11Q8NBS3 891 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 C1orf131Q8NDD1 294 aaKnown RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF564Q8TBZ8 553 aaPredicted RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 RABGGTAQ92696 567 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 TAF4BQ92750 862 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 HES6Q96HZ4 224 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 TRIM6Q9C030 488 aaPredicted RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 PLEKHA5Q9HAU0 1116 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 CACNG4Q9UBN1 327 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 PARP2Q9UGN5 583 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ITGA11Q9UKX5 1188 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ST3GAL5Q9UNP4 418 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ALG6Q9Y672 507 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 PTCH2Q9Y6C5 1203 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 SMIM28A0A1B0GU29 152 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 KCNK3O14649 394 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 MGEA5O60502 916 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 CILPO75339 1184 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 HSPA1AP0DMV8 641 aaKnown RBP13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 HSPA1BP0DMV9 641 aaKnown RBP13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 CYP3A5P20815 502 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 HOXD10P28358 340 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 ATICP31939 592 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 THPOP40225 353 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 RBP5P82980 135 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 MESDQ14696 234 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 PCBP1Q15365 356 aaKnown RBP eCLIP13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 IFI16Q16666 785 aaKnown RBP13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 XKR4Q5GH76 650 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 MMS22LQ6ZRQ5 1243 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 ALG3Q92685 438 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 KRT35Q92764 455 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 PARD6BQ9BYG5 372 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 PDCL3Q9H2J4 239 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 TJP2Q9UDY2 1190 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 CYTH4Q9UIA0 394 aa13.08□□□□□ -0.32
AP003559.1-201ENST00000540906 PTGESO14684 152 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 SPTLC1O15269 473 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 FKTNO75072 461 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 RPS6KA5O75582 802 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 CLCN6P51797 869 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 CKAP4Q07065 602 aaKnown RBP13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 NFX1Q12986 1120 aaKnown RBP13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 ITGA7Q13683 1181 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 DAB2IPQ5VWQ8 1189 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 C9orf57Q5W0N0 161 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 TWF2Q6IBS0 349 aaKnown RBP13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 AADACL2Q6P093 401 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 CD302Q8IX05 232 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 SPATA4Q8NEY3 305 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 PXYLP1Q8TE99 480 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 LPPQ93052 612 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 ZFP42Q96MM3 310 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 LPIN3Q9BQK8 851 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 MRPL45Q9BRJ2 306 aaKnown RBP13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 RBM12Q9NTZ6 932 aaKnown RBP13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 ZNF446Q9NWS9 450 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 AMFRQ9UKV5 643 aa13.07□□□□□ -0.32
AP003559.1-201ENST00000540906 STAU1O95793 577 aaKnown RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 GHRP10912 638 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 COMTP21964 271 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 CD52P31358 61 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 NSFP46459 744 aaKnown RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 YARSP54577 528 aaKnown RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 C11orf63Q6NUN7 778 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 NT5DC4Q86YG4 428 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 GPR161Q8N6U8 529 aaKnown RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 MSANTD4Q8NCY6 345 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 SH3TC2Q8TF17 1288 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 HINFPQ9BQA5 517 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 TRPV6Q9H1D0 765 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 ERVK-5Q9HDB9 667 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 SAGE1Q9NXZ1 904 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 DERAQ9Y315 318 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 SEC31AO94979 1220 aaKnown RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 CD19P15391 556 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 ZNF211Q13398 564 aaPredicted RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 LPIN1Q14693 890 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 ZNF618Q5T7W0 954 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 APBB1IPQ7Z5R6 666 aaPredicted RBP13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 RPAINQ86UA6 219 aa13.06□□□□□ -0.32
AP003559.1-201ENST00000540906 PHF13Q86YI8 300 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms