RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 POLR1BQ9H9Y6 1135 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 AASDHPPTQ9NRN7 309 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 AGPAT5Q9NUQ2 364 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SRP68Q9UHB9 627 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 ZBTB1Q9Y2K1 713 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SYNJ2BP-COX16A0A087WUM0 186 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PAMP19021 973 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SERPINB5P36952 375 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 ALDH1A3P47895 512 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PHC1P78364 1004 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 EIF4A2Q14240 407 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 NAB2Q15742 525 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 IMPG1Q17R60 797 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 CNPY1Q3B7I2 92 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TTC39BQ5VTQ0 682 aaPredicted RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 NECAB2Q7Z6G3 386 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 CCDC33Q8N5R6 958 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PLEKHA8Q96JA3 519 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 FAM111AQ96PZ2 611 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TBC1D10AQ9BXI6 508 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 STK33Q9BYT3 514 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SMARCAD1Q9H4L7 1026 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PTTG2Q9NZH5 202 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 COX16Q9P0S2 106 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 GTF2H1P32780 548 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SERPINB9P50453 376 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TNFAIP2Q03169 654 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SNX17Q15036 470 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 CCDC157Q569K6 752 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 FAM47AQ5JRC9 791 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TMEM53Q6P2H8 277 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 C11orf88Q6PI97 169 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SHC4Q6S5L8 630 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PACS1Q6VY07 963 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 OR7A2PQ8NGA2 310 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 HDAC2Q92769 488 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 GPATCH1Q9BRR8 931 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 PDCD10Q9BUL8 212 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PRDM16Q9HAZ2 1276 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 EHD3Q9NZN3 535 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TFR2Q9UP52 801 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PDS5BQ9NTI5 1447 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 C6orf229H3BNL8 230 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PEX1O43933 1283 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 ITGA2BP08514 1039 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SNRPAP09012 282 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 SRGNP10124 158 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 FCGR1AP12314 374 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 PSMA2P25787 234 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 GSSP48637 474 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 GEMIN4P57678 1058 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 ZNF844Q08AG5 666 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 KCNH2Q12809 1159 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 NET1Q7Z628 596 aaPredicted RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 FGD2Q7Z6J4 655 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 NLRP10Q86W26 655 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 CENPTQ96BT3 561 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 SLC39A3Q9BRY0 314 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 BARX2Q9UMQ3 279 aaPredicted RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 PRAG1Q86YV5 1406 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 WEE2P0C1S8 567 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 AQP5P55064 265 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 COPZ1P61923 177 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 EFR3AQ14156 821 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TAF5Q15542 800 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 BRDTQ58F21 947 aaPredicted RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 GPR107Q5VW38 600 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 MZT2BQ6NZ67 158 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 RNASE11Q8TAA1 199 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 SNX19Q92543 992 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 WNK4Q96J92 1243 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 ING3Q9NXR8 418 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 RPL26L1Q9UNX3 145 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 CHL1O00533 1208 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 OSBPP22059 807 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 TALDO1P37837 337 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 PABPC4Q13310 644 aaKnown RBP eCLIP9.13□□□□□ -0.952e-11■■■□□ 14.9
YBX3-208ENST00000540447 TFDP2Q14188 446 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 QPRTQ15274 297 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 RHOT1Q8IXI2 618 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 CROTQ9UKG9 612 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 COL17A1Q9UMD9 1497 aaPredicted RBP9.13□□□□□ -0.95
YBX3-208ENST00000540447 KANSL1LA0AUZ9 987 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 SNX3O60493 162 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 USP12O75317 370 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 TFE3P19532 575 aaPredicted RBP9.13□□□□□ -0.95
YBX3-208ENST00000540447 SNAP25P60880 206 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 FAPQ12884 760 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ERICH5Q6P6B1 374 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ZBTB46Q86UZ6 589 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 IFNL3Q8IZI9 196 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 ZNF285Q96NJ3 590 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 DGCR6LQ9BY27 220 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 RNF38Q9H0F5 515 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 IRF2BPLQ9H1B7 796 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 HSPBP1Q9NZL4 362 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 SLC12A6Q9UHW9 1150 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 GRID1Q9ULK0 1009 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 STMND1H3BQB6 276 aa9.13□□□□□ -0.95
YBX3-208ENST00000540447 FCHO1O14526 889 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms