RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TMEM191BP0C7N4 346 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 ATF2P15336 505 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 SULF1Q8IWU6 871 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 SEC16BQ96JE7 1060 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 TWNKQ96RR1 684 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 C12orf65Q9H3J6 166 aaKnown RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 NRBP2Q9NSY0 501 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 INTS9Q9NV88 658 aaKnown RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 F5H423 210 aaPredicted RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 MSCO60682 206 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 PROSCO94903 275 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 EFCAB12Q6NXP0 572 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 SEPT1Q8WYJ6 367 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 SENP7Q9BQF6 1050 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 CYTH4Q9UIA0 394 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 FSCN2O14926 492 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 NFICP08651 508 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 TXNP10599 105 aaKnown RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 AMHR2Q16671 573 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 FAM133BQ5BKY9 247 aaKnown RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 IZUMO3Q5VZ72 239 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 ART4Q93070 314 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 XPO6Q96QU8 1125 aaKnown RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 SYNCQ9H7C4 482 aa17.93■□□□□ 0.46
USP28-208ENST00000540438 DIS3Q9Y2L1 958 aaKnown RBP17.93■□□□□ 0.46
USP28-208ENST00000540438 WDR81Q562E7 1941 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 PODXLO00592 558 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 RFC1P35251 1148 aaPredicted RBP17.92■□□□□ 0.46
USP28-208ENST00000540438 MPP2Q14168 576 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 ZNF699Q32M78 642 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 LIN9Q5TKA1 542 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 EXOC3L1Q86VI1 746 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 FMNL3Q8IVF7 1028 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 WDTC1Q8N5D0 677 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 ARFGAP2Q8N6H7 521 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 ARHGEF2Q92974 986 aaKnown RBP17.92■□□□□ 0.46
USP28-208ENST00000540438 CGRRF1Q99675 332 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 SMYD3Q9H7B4 428 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 C17orf75Q9HAS0 396 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 RNF181Q9P0P0 153 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 MAPK13O15264 365 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 MEFVO15553 781 aaPredicted RBP17.92■□□□□ 0.46
USP28-208ENST00000540438 CYP1A1P04798 512 aaPredicted RBP17.92■□□□□ 0.46
USP28-208ENST00000540438 CENPCQ03188 943 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 MAPK6Q16659 721 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 PSME4Q14997 1843 aa17.92■□□□□ 0.46
USP28-208ENST00000540438 DNM1LO00429 736 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 HCRTO43612 131 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 DKC1O60832 514 aaKnown RBP eCLIP17.91■□□□□ 0.46
USP28-208ENST00000540438 HADHBP55084 474 aaKnown RBP17.91■□□□□ 0.46
USP28-208ENST00000540438 DNAJC24Q6P3W2 148 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 RDM1Q8NG50 284 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 OSBPL7Q9BZF2 842 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 IVDP26440 423 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 RGS7P49802 495 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 LACTBP83111 547 aaPredicted RBP17.91■□□□□ 0.46
USP28-208ENST00000540438 GPS1Q13098 491 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 FAM47EQ6ZV65 393 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 FEZF2Q8TBJ5 459 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 HSPH1Q92598 858 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 DCPSQ96C86 337 aaKnown RBP17.91■□□□□ 0.46
USP28-208ENST00000540438 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.91■□□□□ 0.46
USP28-208ENST00000540438 HES2Q9Y543 173 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 NFASCO94856 1347 aa17.91■□□□□ 0.46
USP28-208ENST00000540438 A0A087WZ62 844 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 GCLCP48506 637 aaPredicted RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 NFX1Q12986 1120 aaKnown RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 BYSLQ13895 437 aaKnown RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 TMED2Q15363 201 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 HOOK3Q86VS8 718 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 KIAA0319LQ8IZA0 1049 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 C12orf29Q8N999 325 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 PIWIL1Q96J94 861 aaKnown RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 KLF6Q99612 283 aaPredicted RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 FDXACB1Q9BRP7 624 aaPredicted RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 SAYSD1Q9NPB0 183 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 ZBTB42B2RXF5 422 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 SGK1O00141 431 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 GPR25O00155 361 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 ITGB3P05106 788 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 PLCB4Q15147 1175 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 RHOT1Q8IXI2 618 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 ACO2Q99798 780 aaKnown RBP17.9■□□□□ 0.46
USP28-208ENST00000540438 VPS33BQ9H267 617 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 FGFR1OP2Q9NVK5 253 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 RBPJLQ9UBG7 517 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 AKT3Q9Y243 479 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 PHIPQ8WWQ0 1821 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 TMEM120BA0PK00 339 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 MTA2O94776 668 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 ARSEP51690 589 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 GLRA4Q5JXX5 417 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 ERICH1Q86X53 443 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 SLC17A8Q8NDX2 589 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 SPOCK2Q92563 424 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 TLCD1Q96CP7 247 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 GPR20Q99678 358 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 APOL6Q9BWW8 343 aa17.9■□□□□ 0.46
USP28-208ENST00000540438 MAGEB5Q9BZ81 275 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms