RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 SIPA1L3O60292 1781 aaPredicted RBP13.65□□□□□ -0.22
MSH6-210ENST00000540021 SNED1Q8TER0 1413 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 E2F8A0AVK6 867 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 CST8O60676 142 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 TRPA1O75762 1119 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 TMEM191BP0C7N4 346 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 SNHG28P0DPA3 235 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 MYL2P10916 166 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 BGNP21810 368 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 PTPN4P29074 926 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 ALDH1B1P30837 517 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 PEX5P50542 639 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 PTK7Q13308 1070 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 NBPF20Q3BBV1 942 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 SCG3Q8WXD2 468 aaKnown RBP13.65□□□□□ -0.22
MSH6-210ENST00000540021 IP6K2Q9UHH9 426 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 POU5F1Q01860 360 aaKnown RBP13.65□□□□□ -0.22
MSH6-210ENST00000540021 CENPCQ03188 943 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 PTK6Q13882 451 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 BMT2Q1RMZ1 405 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 CLEC16AQ2KHT3 1053 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 KLHL38Q2WGJ6 581 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 FBXO36Q8NEA4 188 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 PAFAH2Q99487 392 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 SENP7Q9BQF6 1050 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 EBF2Q9HAK2 575 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 PARVAQ9NVD7 372 aa13.65□□□□□ -0.22
MSH6-210ENST00000540021 RBAKQ9NYW8 714 aaPredicted RBP13.65□□□□□ -0.22
MSH6-210ENST00000540021 XPO7Q9UIA9 1087 aaKnown RBP13.65□□□□□ -0.22
MSH6-210ENST00000540021 FRMPD4Q14CM0 1322 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 WDR64B1ANS9 1081 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 GEMIN4P57678 1058 aaKnown RBP13.64□□□□□ -0.23
MSH6-210ENST00000540021 LRRC23Q53EV4 343 aaPredicted RBP13.64□□□□□ -0.23
MSH6-210ENST00000540021 MFSD5Q6N075 450 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 C1orf228Q6PIY5 440 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 MFSD7Q6UXD7 560 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 CRLF3Q8IUI8 442 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 NUDCD3Q8IVD9 361 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 FAM71DQ8N9W8 422 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 TBX20Q9UMR3 447 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 C2CD2Q9Y426 696 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 CYP3A7-CYP3A51PA0A087WV96 503 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 PIK3CDO00329 1044 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 EDIL3O43854 480 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 PROSCO94903 275 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 CYP3A7P24462 503 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 PSEN1P49768 467 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 PDE1BQ01064 536 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 SLC1A5Q15758 541 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 CCNG2Q16589 344 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 RNF220Q5VTB9 566 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 TMEM143Q96AN5 459 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 MXRA8Q9BRK3 442 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 TUBB6Q9BUF5 446 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 TMEM120AQ9BXJ8 343 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 USP21Q9UK80 565 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 GCLCP48506 637 aaPredicted RBP13.64□□□□□ -0.23
MSH6-210ENST00000540021 ATXN3P54252 364 aaPredicted RBP13.64□□□□□ -0.23
MSH6-210ENST00000540021 EFTUD2Q15029 972 aaKnown RBP eCLIP13.64□□□□□ -0.232e-7■■■□□ 17.5
MSH6-210ENST00000540021 PPP6R3Q5H9R7 873 aaPredicted RBP13.64□□□□□ -0.23
MSH6-210ENST00000540021 RNF43Q68DV7 783 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 RASSF3Q86WH2 238 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 RANBP17Q9H2T7 1088 aaKnown RBP13.64□□□□□ -0.23
MSH6-210ENST00000540021 ARHGEF3Q9NR81 526 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 CHKBQ9Y259 395 aa13.64□□□□□ -0.23
MSH6-210ENST00000540021 CNTNAP4Q9C0A0 1308 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 LAMB4A4D0S4 1761 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 EME2A4GXA9 379 aaPredicted RBP13.63□□□□□ -0.23
MSH6-210ENST00000540021 P4HA2O15460 535 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 SLC26A4O43511 780 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 RARRES1P49788 294 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 CACNA2D1P54289 1103 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 TAS2R40P59535 323 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 PSMC5P62195 406 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 THNSL1Q8IYQ7 743 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 FAM71AQ8IYT1 594 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 ZDHHC14Q8IZN3 488 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 TMEM35BQ8NCS4 154 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 ATP6V0A1Q93050 837 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 EPB41L4BQ9H329 900 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 DENND2DQ9H6A0 471 aaPredicted RBP13.63□□□□□ -0.23
MSH6-210ENST00000540021 PRM3Q9NNZ6 103 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 AGO2Q9UKV8 859 aaKnown RBP13.63□□□□□ -0.23
MSH6-210ENST00000540021 GINS2Q9Y248 185 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 PKD1L3Q7Z443 1732 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 LOC100653049A0A140TA62 436 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 FSCN2O14926 492 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 CFLARO15519 480 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 KRT34O76011 436 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 SNUPNO95149 360 aaKnown RBP13.63□□□□□ -0.23
MSH6-210ENST00000540021 POLR2BP30876 1174 aaKnown RBP13.63□□□□□ -0.23
MSH6-210ENST00000540021 NPTX2P47972 431 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 WDR4P57081 412 aaKnown RBP13.63□□□□□ -0.23
MSH6-210ENST00000540021 COG7P83436 770 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 SPIRE1Q08AE8 756 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 OTOAQ7RTW8 1153 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 MCF2L2Q86YR7 1114 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 PPP4R1Q8TF05 950 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 UBE4BO95155 1302 aa13.63□□□□□ -0.23
MSH6-210ENST00000540021 KRT37O76014 449 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms