RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 BTBD6Q96KE9 485 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 PARK7Q99497 189 aaKnown RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 NUP85Q9BW27 656 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 NFKBIZQ9BYH8 718 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 INO80BQ9C086 356 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 MTMR12Q9C0I1 747 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 BHMG1C9JSJ3 638 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 MEFVO15553 781 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 ADCY6O43306 1168 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 ASS1P00966 412 aaKnown RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 CYP1A1P04798 512 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 NR1D1P20393 614 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 COMTP21964 271 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 FNTAP49354 379 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 AP3M2P53677 418 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 POU5F1BQ06416 359 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 PAK2Q13177 524 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF677Q86XU0 584 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 TMEM192Q8IY95 271 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 SREK1Q8WXA9 508 aaKnown RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 KRT35Q92764 455 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 CD101Q93033 1021 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF653Q96CK0 615 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 MRRFQ96E11 262 aaKnown RBP11.45□□□□□ -0.58
CLIP1-210ENST00000538120 RPS6KC1Q96S38 1066 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 CDT1Q9H211 546 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 TNFSF13BQ9Y275 285 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 NR2E1Q9Y466 385 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 PCDHB4Q9Y5E5 795 aa11.45□□□□□ -0.58
CLIP1-210ENST00000538120 CARNS1A5YM72 827 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 TMEM110-MUSTN1A8MSY1 372 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 GPR25O00155 361 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CSDE1O75534 798 aaKnown RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 HOXD8P13378 290 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 HPDP32754 393 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MARCKSL1P49006 195 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 PEX5P50542 639 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MNAT1P51948 309 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF132P52740 706 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MYL6P60660 151 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 TNNC1P63316 161 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 ACVR2BQ13705 512 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MESDQ14696 234 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 DUSP28Q4G0W2 176 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 DDX42Q86XP3 938 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 THNSL1Q8IYQ7 743 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MCOLN2Q8IZK6 566 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF564Q8TBZ8 553 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 TINF2Q9BSI4 451 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 EPN3Q9H201 632 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CARD9Q9H257 536 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 A0A087WZ62 844 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 KRIT1O00522 736 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MAGEB2O15479 319 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 COL9A1P20849 921 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 TBXAS1P24557 533 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 BPIFB4P59827 614 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF211Q13398 564 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 FAM187BQ17R55 369 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 DUOXA2Q1HG44 320 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF568Q3ZCX4 644 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CEP85LQ5SZL2 805 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MARCH8Q5T0T0 291 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 AADACL2Q6P093 401 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MTHFD1LQ6UB35 978 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 TMEM270Q6UE05 265 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 MAATS1Q7Z4T9 603 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 OTUD6BQ8N6M0 293 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 RBBP8NLQ8NC74 664 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 ZNF473Q8WTR7 871 aaKnown RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CPA5Q8WXQ8 436 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CYFIP2Q96F07 1278 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 KCNK17Q96T54 332 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 FDXACB1Q9BRP7 624 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CENPHQ9H3R5 247 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 UVRAGQ9P2Y5 699 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 CNOT8Q9UFF9 292 aaKnown RBP11.44□□□□□ -0.58
CLIP1-210ENST00000538120 PLAAQ9Y263 795 aa11.44□□□□□ -0.58
CLIP1-210ENST00000538120 B4GALT4O60513 344 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 FGGP02679 453 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 MMP3P08254 477 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 MAPK4P31152 587 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 PSEN2P49810 448 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 OSTNP61366 133 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 POU5F1Q01860 360 aaKnown RBP11.43□□□□□ -0.58
CLIP1-210ENST00000538120 PTGISQ16647 500 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 B4GALNT4Q76KP1 1039 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 TMEM130Q8N3G9 435 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 POM121Q96HA1 1249 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 CCT8L2Q96SF2 557 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 PPP1R16BQ96T49 567 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 ZSWIM1Q9BR11 485 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 DDX47Q9H0S4 455 aaKnown RBP11.43□□□□□ -0.58
CLIP1-210ENST00000538120 PRMT7Q9NVM4 692 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-210ENST00000538120 COL1A2P08123 1366 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 SLC15A5A6NIM6 579 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 H3BRB1 525 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 CCDC188H7C350 402 aa11.43□□□□□ -0.58
CLIP1-210ENST00000538120 SART1O43290 800 aaKnown RBP11.43□□□□□ -0.58
CLIP1-210ENST00000538120 VTNP04004 478 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms