RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SUSD4Q5VX71 490 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CHMP1BQ7LBR1 199 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 LUZP2Q86TE4 346 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 PPP2R3CQ969Q6 453 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 MED15Q96RN5 788 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 EIF2AK1Q9BQI3 630 aaKnown RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 ALDH8A1Q9H2A2 487 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 POLD4Q9HCU8 107 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 C6orf203Q9P0P8 240 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SSU72P8A0A1W2PR75 194 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 ASB14A6NK59 587 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 H0YC42 278 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SLC16A3O15427 465 aaKnown RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CYP26A1O43174 497 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 PHF2O75151 1096 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 MYL2P10916 166 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CACNB3P54284 484 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 ALX1Q15699 326 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CEP78Q5JTW2 689 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 ZNF467Q7Z7K2 595 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 LONP2Q86WA8 852 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SPATA2LQ8IUW3 424 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 KRT78Q8N1N4 520 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 ATPAF2Q8N5M1 289 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 TNIP2Q8NFZ5 429 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 OXER1Q8TDS5 423 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 AGAP3Q96P47 875 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CCT8L2Q96SF2 557 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 PRMT1Q99873 361 aaKnown RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 TASP1Q9H6P5 420 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 NPHS2Q9NP85 383 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SLIT1O75093 1534 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CLASP2O75122 1294 aaKnown RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 PYGMP11217 842 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 FCER1AP12319 257 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 RBP5P82980 135 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SPP2Q13103 211 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SLC9A5Q14940 896 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SLC18A3Q16572 532 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 MFSD14CQ5VZR4 134 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CLMNQ96JQ2 1002 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 DIABLOQ9NR28 239 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 C20orf96Q9NUD7 363 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CDY2AQ9Y6F7 541 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CDY1Q9Y6F8 540 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 ZNF335Q9H4Z2 1342 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 UBXN8O00124 270 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CCND1P24385 295 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 PRDX5P30044 214 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SULT1E1P49888 294 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 NLRP11P59045 1033 aaKnown RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 LRRC36Q1X8D7 754 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 FAM162AQ96A26 154 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 AGBL1Q96MI9 1066 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SENP7Q9BQF6 1050 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 CPVLQ9H3G5 476 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 TDRD3Q9H7E2 651 aaKnown RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 TUFT1Q9NNX1 390 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 DCP1AQ9NPI6 582 aaPredicted RBP11.13□□□□□ -0.63
CLIP1-209ENST00000537178 DTNAQ9Y4J8 743 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 SNRPAP09012 282 aaKnown RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 VSNL1P62760 191 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CSTF3Q12996 717 aaKnown RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PIGHQ14442 188 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 DAB2IPQ5VWQ8 1189 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 HORMAD1Q86X24 394 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CYFIP2Q96F07 1278 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 THTPAQ9BU02 230 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 SPATA16Q9BXB7 569 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 STK33Q9BYT3 514 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 NDEL1Q9GZM8 345 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CDYLQ9Y232 598 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 MMP10P09238 476 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 IRX1P78414 480 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ATP2C1P98194 919 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PDIA5Q14554 519 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ANGPT1Q15389 498 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ZNF473Q8WTR7 871 aaKnown RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 DNAJC9Q8WXX5 260 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ELMO2Q96JJ3 720 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CCT7Q99832 543 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 LRRC1Q9BTT6 524 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 TMEM260Q9NX78 707 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CACNA2D2Q9NY47 1150 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PAK5Q9P286 719 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 NEU2Q9Y3R4 380 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 AIM2O14862 343 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PRKCBP05771 671 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 CHN1P15882 459 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 C4BPBP20851 252 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 KCNK10P57789 538 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ARHGEF7Q14155 803 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 AGBL2Q5U5Z8 902 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 RNF149Q8NC42 400 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 ERP27Q96DN0 273 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 PPP1R36Q96LQ0 422 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 XPO6Q96QU8 1125 aaKnown RBP11.12□□□□□ -0.63
CLIP1-209ENST00000537178 HSPBP1Q9NZL4 362 aa11.12□□□□□ -0.63
CLIP1-209ENST00000537178 GRID1Q9ULK0 1009 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms