RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 CPSF2Q9P2I0 782 aaKnown RBP7.14□□□□□ -1.27
USP28-202ENST00000535607 LTBP1Q14766 1721 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 KIAA1551Q9HCM1 1747 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 PDS5AQ29RF7 1337 aaKnown RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 MYO1FO00160 1098 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 CES2O00748 559 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 BUB1BO60566 1050 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 USP2O75604 605 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 PARP1P09874 1014 aaKnown RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 NEFHP12036 1026 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 NPR1P16066 1061 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 IBSPP21815 317 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 ARL4AP40617 200 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 EIF3BP55884 814 aaKnown RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 STX17P56962 302 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 HAND2P61296 217 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 GUCY1A3Q02108 690 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 C2orf54Q08AI8 447 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 IFT88Q13099 833 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 PABPC4Q13310 644 aaKnown RBP eCLIP7.13□□□□□ -1.27
USP28-202ENST00000535607 XRCC4Q13426 336 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 RIPK1Q13546 671 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 RALGPS1Q5JS13 557 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 AGBL2Q5U5Z8 902 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 LDHAL6AQ6ZMR3 332 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 MAATS1Q7Z4T9 603 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 CPLX4Q7Z7G2 160 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 MICU3Q86XE3 530 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 SYNE4Q8N205 404 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 TEX9Q8N6V9 391 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 MAB21L3Q8N8X9 362 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.13□□□□□ -1.27
USP28-202ENST00000535607 RIN2Q8WYP3 895 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 TAF4BQ92750 862 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 NINJ1Q92982 152 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 SAAL1Q96ER3 474 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 MFSD3Q96ES6 412 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 IFT74Q96LB3 600 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 CCDC43Q96MW1 224 aaKnown RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 SCLT1Q96NL6 688 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 CRAMP1Q96RY5 1269 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 RNF26Q9BY78 433 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 IFIH1Q9BYX4 1025 aaKnown RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 CUEDC2Q9H467 287 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 NHEJ1Q9H9Q4 299 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 TAB2Q9NYJ8 693 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 PCDHA2Q9Y5H9 948 aa7.13□□□□□ -1.27
USP28-202ENST00000535607 TIMM13Q9Y5L4 95 aaPredicted RBP7.13□□□□□ -1.27
USP28-202ENST00000535607 CHD4Q14839 1912 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 MYH13Q9UKX3 1938 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 TTC26A0AVF1 554 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 BTBD18B2RXH4 712 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 B4E1Z4 1266 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 FOXN1O15353 648 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 GPAA1O43292 621 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 AKR1B10O60218 316 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 RFPL3O75679 317 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 FLOT1O75955 427 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 RPN1P04843 607 aaKnown RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 ZGLP1P0C6A0 271 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 UQCRFS1P1P0C7P4 283 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 SRGNP10124 158 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 GCKP35557 465 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 LONP1P36776 959 aaKnown RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 PRPHP41219 470 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 ANTXR2P58335 489 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 GPR85P60893 370 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 HERVK_113P62684 666 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 AMPD3Q01432 767 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 MAP2K1Q02750 393 aaPredicted RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 GRAPQ13588 217 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 KCNB1Q14721 858 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 WTAPQ15007 396 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 R3HDM1Q15032 1099 aaKnown RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 UBE3CQ15386 1083 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 C21orf62-AS1Q17RA5 79 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 KIZQ2M2Z5 673 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 TKFCQ3LXA3 575 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 SPDYCQ5MJ68 293 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 ARL6IP4Q66PJ3 421 aaKnown RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 ATG9AQ7Z3C6 839 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 HOOK3Q86VS8 718 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 FUKQ8N0W3 1084 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 IQCKQ8N0W5 287 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 GBP7Q8N8V2 638 aaPredicted RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 KLHDC4Q8TBB5 520 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 GRAPLQ8TC17 118 aaPredicted RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 PHKBQ93100 1093 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 CENPTQ96BT3 561 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 CYFIP2Q96F07 1278 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 C1orf159Q96HA4 380 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 RBM17Q96I25 401 aaKnown RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 HHIPL1Q96JK4 782 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 ZIM3Q96PE6 472 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 OSBPL9Q96SU4 736 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 RC3H2Q9HBD1 1191 aaKnown RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 CD248Q9HCU0 757 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 CABP5Q9NP86 173 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 GDF3Q9NR23 364 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 CNNM1Q9NRU3 951 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms