RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SPECC1L-ADORA2AF8WAN1 911 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 KCNK3O14649 394 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 HAT1O14929 419 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 NKRFO15226 690 aaKnown RBP eCLIP5.91□□□□□ -1.46
CD44-236ENST00000533222 TEX28O15482 410 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 USO1O60763 962 aaKnown RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 CBFA2T3O75081 653 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 RFPL3O75679 317 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 GFPT2O94808 682 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 BAIAP3O94812 1187 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 MPOP05164 745 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ITGB1P05556 798 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 UBL4AP11441 157 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ALAS1P13196 640 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 PSMA4P25789 261 aaKnown RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 GPC3P51654 580 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ALDH18A1P54886 795 aaKnown RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 AP2B1P63010 937 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 OLR1P78380 273 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 PRR5P85299 388 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ITGA7Q13683 1181 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ANO4Q32M45 955 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 PLEKHG6Q3KR16 790 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ZCWPW2Q504Y3 356 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 HYIQ5T013 277 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ARMC4Q5T2S8 1044 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 DEPDC1Q5TB30 811 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 MROH9Q5TGP6 573 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 GALNT17Q6IS24 598 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 FSTL4Q6MZW2 842 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ZSCAN25Q6NSZ9 544 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 CYB5D1Q6P9G0 228 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 RSRC2Q7L4I2 434 aaKnown RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 ERICH1Q86X53 443 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 ZC3H7AQ8IWR0 971 aaKnown RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 USP38Q8NB14 1042 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 NETO2Q8NC67 525 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 CNNM3Q8NE01 707 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 AFAP1L1Q8TED9 768 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.91□□□□□ -1.46
CD44-236ENST00000533222 RUBCNQ92622 972 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 NINJ1Q92982 152 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 CATSPER2Q96P56 530 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 MPHOSPH8Q99549 860 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 AIFM2Q9BRQ8 373 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 MCOLN1Q9GZU1 580 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 VCXQ9H320 206 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 EPB41L4BQ9H329 900 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 EPB41L1Q9H4G0 881 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 RMND1Q9NWS8 449 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 PDP2Q9P2J9 529 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 MBD2Q9UBB5 411 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 MYO1AQ9UBC5 1043 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 SAP30BPQ9UHR5 308 aaKnown RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 ZMYND8Q9ULU4 1186 aaPredicted RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 COA3Q9Y2R0 106 aaPredicted RBP5.91□□□□□ -1.46
CD44-236ENST00000533222 RABGAP1Q9Y3P9 1069 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 NFE2L3Q9Y4A8 694 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 PPP2R3BQ9Y5P8 575 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 SNX9Q9Y5X1 595 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 NUMBLQ9Y6R0 609 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 COMMD3-BMI1R4GMX3 469 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 UBN2Q6ZU65 1347 aa5.91□□□□□ -1.46
CD44-236ENST00000533222 IFT140Q96RY7 1462 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 CDK13Q14004 1512 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 ARPC4-TTLL3A0A0A6YYG9 625 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 TCRBV5S4A2TA0A5A2 114 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 FAM47E-STBD1D6RA91 191 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 MATN2O00339 956 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 NDC80O14777 642 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 B4GALT4O60513 344 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 TSC22D2O75157 780 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 TACC1O75410 805 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 CYP1A2P05177 515 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 GSTA1P08263 222 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 ALADP13716 330 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 MX1P20591 662 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 IL10P22301 178 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 EPS15P42566 896 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 MXI1P50539 228 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 DNM2P50570 870 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 MTTPP55157 894 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 UBASH3AP57075 661 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 YBX1P67809 324 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 ZNF200P98182 395 aaPredicted RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 GUCY1B3Q02153 619 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 RELQ04864 619 aaPredicted RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 PPFIA1Q13136 1202 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 TCIRG1Q13488 830 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 ERCC6LQ2NKX8 1250 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 OTOP3Q7RTS5 596 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 EXOC3L1Q86VI1 746 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 CAND1Q86VP6 1230 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 PLA2G4DQ86XP0 818 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 WDR75Q8IWA0 830 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 CCDC83Q8IWF9 413 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 TRMT2AQ8IZ69 625 aaKnown RBP5.9□□□□□ -1.46
CD44-236ENST00000533222 SCYL3Q8IZE3 742 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 FUKQ8N0W3 1084 aa5.9□□□□□ -1.46
CD44-236ENST00000533222 SYNPOQ8N3V7 929 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms