RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 LEMD2Q8NC56 503 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 SHKBP1Q8TBC3 707 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 TSPAN18Q96SJ8 248 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 FIZ1Q96SL8 496 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 SEPT5Q99719 369 aaPredicted RBP14.08□□□□□ -0.16
CPSF1-204ENST00000529288 PYM1Q9BRP8 204 aaKnown RBP14.08□□□□□ -0.16
CPSF1-204ENST00000529288 SEMA4AQ9H3S1 761 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 DPP3Q9NY33 737 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 FBXO2Q9UK22 296 aaPredicted RBP14.08□□□□□ -0.16
CPSF1-204ENST00000529288 MRPS17Q9Y2R5 130 aaKnown RBP14.08□□□□□ -0.16
CPSF1-204ENST00000529288 DOCK8Q8NF50 2099 aa14.08□□□□□ -0.16
CPSF1-204ENST00000529288 MTMR11A4FU01 709 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 HEPACAM2A8MVW5 462 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 CYB561D2O14569 222 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 ZNF263O14978 683 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 VNN2O95498 520 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 AARSP49588 968 aaKnown RBP eCLIP14.07□□□□□ -0.16
CPSF1-204ENST00000529288 RESTQ13127 1097 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 MYBPC2Q14324 1141 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 PTPAQ15257 358 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 MGAT5BQ3V5L5 792 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 SLC39A12Q504Y0 691 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 CENPPQ6IPU0 288 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 TSSK4Q6SA08 328 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 ZNF720Q7Z2F6 126 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 SYCP3Q8IZU3 236 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 THEM5Q8N1Q8 247 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 TTC9BQ8N6N2 239 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 IRF7Q92985 503 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 NELL2Q99435 816 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 FAM213AQ9BRX8 229 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 OSBPL6Q9BZF3 934 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 ATXN3LQ9H3M9 355 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 ASB7Q9H672 318 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 STK17AQ9UEE5 414 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 DERAQ9Y315 318 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 SRPRBQ9Y5M8 271 aaKnown RBP14.07□□□□□ -0.16
CPSF1-204ENST00000529288 DOCK6Q96HP0 2047 aa14.07□□□□□ -0.16
CPSF1-204ENST00000529288 TRIP11Q15643 1979 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 MYMKA6NI61 221 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 PIRO00625 290 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 MAN2B1O00754 1011 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 DPYSL4O14531 572 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 KINO60870 393 aaKnown RBP14.06□□□□□ -0.16
CPSF1-204ENST00000529288 GCNT3O95395 438 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 ADRB2P07550 413 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 PSMC3P17980 439 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 SYT1P21579 422 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 TAF6P49848 677 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 TAF12Q16514 161 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 STXBP5Q5T5C0 1151 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 DNAJB7Q7Z6W7 309 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-204ENST00000529288 KIAA2013Q8IYS2 634 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 MAML2Q8IZL2 1156 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-204ENST00000529288 OR10T2Q8NGX3 314 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 TTC8Q8TAM2 541 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 CSGALNACT1Q8TDX6 532 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 GIPC2Q8TF65 315 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 FAM3CQ92520 227 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 DNASE1L2Q92874 299 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 KCNN1Q92952 543 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 SAAL1Q96ER3 474 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 ACCSQ96QU6 501 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 DNAJC25Q9H1X3 360 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 ZNF334Q9HCZ1 680 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-204ENST00000529288 EXOC7Q9UPT5 735 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 PIAS3Q9Y6X2 628 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 CACNA1HO95180 2353 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 MYO15AQ9UKN7 3530 aa14.06□□□□□ -0.16
CPSF1-204ENST00000529288 GOLGA8IPA6NC78 632 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 GOLGA8JA6NMD2 632 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 GAP43P17677 238 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 GABRR2P28476 465 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 STAT6P42226 847 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 ID4P47928 161 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 KPNA1P52294 538 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-204ENST00000529288 EPHA5P54756 1037 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 TFAMQ00059 246 aaKnown RBP14.05□□□□□ -0.16
CPSF1-204ENST00000529288 KCNA1Q09470 495 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 VEPH1Q14D04 833 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 POSTNQ15063 836 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 ARHGAP15Q53QZ3 475 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 GPR158Q5T848 1215 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 WSCD1Q658N2 575 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 CCDC73Q6ZRK6 1079 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 ITIH5Q86UX2 942 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 TMC8Q8IU68 726 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 MFSD6LQ8IWD5 586 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 DCLK2Q8N568 766 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 PDILTQ8N807 584 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 DEPDC1BQ8WUY9 529 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 ATRIPQ8WXE1 791 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 LPIN3Q9BQK8 851 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 GPR88Q9GZN0 384 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 ST6GALNAC4Q9H4F1 302 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 LMAN1LQ9HAT1 526 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 DSEQ9UL01 958 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 C2CD2Q9Y426 696 aa14.05□□□□□ -0.16
CPSF1-204ENST00000529288 ANO9A1A5B4 782 aa14.04□□□□□ -0.16
CPSF1-204ENST00000529288 IL18RAPO95256 599 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms