RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CYP2C18P33260 490 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 MATR3P43243 847 aaKnown RBP eCLIP8.02□□□□□ -1.13
CD44-228ENST00000528455 CASP4P49662 377 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 AP3M2P53677 418 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 FANCCQ00597 558 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PAK2Q13177 524 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 KCNJ12Q14500 433 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 DSC3Q14574 896 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 NOLC1Q14978 699 aaKnown RBP eCLIP8.02□□□□□ -1.13
CD44-228ENST00000528455 SNRNP35Q16560 246 aaKnown RBP8.02□□□□□ -1.13
CD44-228ENST00000528455 FILIP1LQ4L180 1135 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PLEKHG4Q58EX7 1191 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CEP135Q66GS9 1140 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 ALKBH2Q6NS38 261 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PSRC1Q6PGN9 363 aaPredicted RBP8.02□□□□□ -1.13
CD44-228ENST00000528455 TRIM59Q8IWR1 403 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 FAM186BQ8IYM0 893 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 RGL4Q8IZJ4 473 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 GPR152Q8TDT2 470 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PARD3BQ8TEW8 1205 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 SEPT8Q92599 483 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 EEF2KMTQ96G04 330 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CPB2Q96IY4 423 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CNTNAP3BQ96NU0 1288 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 ACAP3Q96P50 834 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PPP1R16BQ96T49 567 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.02□□□□□ -1.13
CD44-228ENST00000528455 FAM213AQ9BRX8 229 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 TUBGCP2Q9BSJ2 902 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 IFIH1Q9BYX4 1025 aaKnown RBP8.02□□□□□ -1.13
CD44-228ENST00000528455 CNTNAP3Q9BZ76 1288 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PDZD7Q9H5P4 517 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 ASB7Q9H672 318 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 PLEKHA5Q9HAU0 1116 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 UBN1Q9NPG3 1134 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 RGS18Q9NS28 235 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 MTMR10Q9NXD2 777 aa8.02□□□□□ -1.13
CD44-228ENST00000528455 CPSF3Q9UKF6 684 aaKnown RBP8.02□□□□□ -1.13
CD44-228ENST00000528455 ENPP3O14638 875 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CBFA2T2O43439 604 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 FZD6O60353 706 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 NBNO60934 754 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 IL18RAPO95256 599 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 SERPINC1P01008 464 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 FGBP02675 491 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 STAG3L1P0CL83 205 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 GHRP10912 638 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 ATP1A3P13637 1013 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 EPB42P16452 691 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 GTF2H1P32780 548 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 MTIF2P46199 727 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 ACOT2P49753 483 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 RAB27AP51159 221 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CYP2J2P51589 502 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 VAMP7P51809 220 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CCL23P55773 120 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 UBASH3AP57075 661 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 MBTPS1Q14703 1052 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 PSMD6Q15008 389 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 KRT31Q15323 416 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 MAN2A1Q16706 1144 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 ZNF568Q3ZCX4 644 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CCDC40Q4G0X9 1142 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 VWA3BQ502W6 1294 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 UBXN11Q5T124 520 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 EEF1DP3Q658K8 133 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 ALKAL1Q6UXT8 129 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 SLC24A5Q71RS6 500 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 APTXQ7Z2E3 356 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 RTN4RL1Q86UN2 441 aaPredicted RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 NT5DC4Q86YG4 428 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CREBRFQ8IUR6 639 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 HACE1Q8IYU2 909 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 DBF4BQ8NFT6 615 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 PGBD4Q96DM1 585 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CNOT6LQ96LI5 555 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 NAP1L5Q96NT1 182 aaPredicted RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 SLC30A3Q99726 388 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 ADAM2Q99965 735 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CCDC94Q9BW85 323 aaPredicted RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 OSBPL7Q9BZF2 842 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 TRIM6Q9C030 488 aaPredicted RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 CDT1Q9H211 546 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 MTIF3Q9H2K0 278 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 TMX1Q9H3N1 280 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 NDST4Q9H3R1 872 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 ELAC1Q9H777 363 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 RPF1Q9H9Y2 349 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 IL23AQ9NPF7 189 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 C1orf112Q9NSG2 853 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 ANKFY1Q9P2R3 1169 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 PIN4Q9Y237 131 aaKnown RBP8.01□□□□□ -1.13
CD44-228ENST00000528455 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.01□□□□□ -1.13
CD44-228ENST00000528455 KCNMB2Q9Y691 235 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 A0A0C4DFX4 3053 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 TRIP11Q15643 1979 aa8.01□□□□□ -1.13
CD44-228ENST00000528455 CITO14578 2027 aa8□□□□□ -1.13
CD44-228ENST00000528455 ABHD14A-ACY1A0A1B0GW23 586 aa8□□□□□ -1.13
CD44-228ENST00000528455 TTC26A0AVF1 554 aa8□□□□□ -1.13
CD44-228ENST00000528455 GOLGA8IPA6NC78 632 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms