RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 C1orf228Q6PIY5 440 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 CNNM3Q8NE01 707 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 GLIS3Q8NEA6 775 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 SPIRE2Q8WWL2 714 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 KIFAP3Q92845 792 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 IRF7Q92985 503 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 B3GALT6Q96L58 329 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 TIGD1Q96MW7 591 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 KIFC3Q9BVG8 833 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 TIPINQ9BVW5 301 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 COLEC11Q9BWP8 271 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 NFKBIZQ9BYH8 718 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 FGFBP2Q9BYJ0 223 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 CCDC113Q9H0I3 377 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 FZD8Q9H461 694 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 BRD9Q9H8M2 597 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 AVENQ9NQS1 362 aaPredicted RBP11.93□□□□□ -0.5
NEDD8-204ENST00000526430 VPS45Q9NRW7 570 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 ANKFY1Q9P2R3 1169 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 USP25Q9UHP3 1055 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 ODF2LQ9ULJ1 636 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 NEUROG3Q9Y4Z2 214 aa11.93□□□□□ -0.5
NEDD8-204ENST00000526430 NUP210Q8TEM1 1887 aaPredicted RBP11.93□□□□□ -0.5
NEDD8-204ENST00000526430 TRIP11Q15643 1979 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CACNA1EQ15878 2313 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 ARL5CA6NH57 179 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 F8W810 466 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CCL16O15467 120 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 PPP1R37O75864 691 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CEACAM1P13688 526 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 PLS3P13797 630 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 FCARP24071 287 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 PEX3P56589 373 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 MBTD1Q05BQ5 628 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 DPYDQ12882 1025 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 LRRC32Q14392 662 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CCDC6Q16204 474 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 UBXN11Q5T124 520 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 TANGO2Q6ICL3 276 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CACNA2D4Q7Z3S7 1137 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 MAP4K3Q8IVH8 894 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 TMEM161BQ8NDZ6 487 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 RASSF8Q8NHQ8 419 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 SPATA20Q8TB22 786 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 GAB3Q8WWW8 586 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 HPS3Q969F9 1004 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 MSANTD3Q96H12 275 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 NLRP4Q96MN2 994 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CLSTN3Q9BQT9 956 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 C17orf75Q9HAS0 396 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 ARHGAP28Q9P2N2 729 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 ADAM28Q9UKQ2 775 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 POLIQ9UNA4 740 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 USP20Q9Y2K6 914 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 PIAS3Q9Y6X2 628 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 SHROOM3Q8TF72 1996 aa11.92□□□□□ -0.5
NEDD8-204ENST00000526430 CCDC163A0A0D9SF12 145 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 TOP3BO95985 862 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 CSRP1P21291 193 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 NMT1P30419 496 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 MCM4P33991 863 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 HOXD13P35453 343 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 MPLP40238 635 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 NAMPTP43490 491 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 NCKAP1LP55160 1127 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 HEATR6Q6AI08 1181 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ZNF720Q7Z2F6 126 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 SRGAP1Q7Z6B7 1085 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 SFR1Q86XK3 245 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ELOA2Q8IYF1 753 aaPredicted RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 SLC7A14Q8TBB6 771 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ING5Q8WYH8 240 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 PIK3R5Q8WYR1 880 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ERCC4Q92889 916 aaPredicted RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ZC3H10Q96K80 434 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 PYM1Q9BRP8 204 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 TRMT61BQ9BVS5 477 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 IKZF4Q9H2S9 585 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 MAGEF1Q9HAY2 307 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ZNF334Q9HCZ1 680 aaPredicted RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 HCFC1R1Q9NWW0 138 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 DNMT3BQ9UBC3 853 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 MRPS23Q9Y3D9 190 aaKnown RBP11.91□□□□□ -0.5
NEDD8-204ENST00000526430 ZMYM2Q9UBW7 1377 aa11.91□□□□□ -0.5
NEDD8-204ENST00000526430 KIAA1549LQ6ZVL6 1849 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 SF3B1O75533 1304 aaKnown RBP eCLIP11.9□□□□□ -0.54e-7■■■■■ 86.2
NEDD8-204ENST00000526430 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.9□□□□□ -0.5
NEDD8-204ENST00000526430 GOLGA6L4A6NEF3 574 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 ABLIM1O14639 778 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 SLC16A4O15374 487 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 B4GALT5O43286 388 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 TRAK2O60296 914 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 AKAP3O75969 853 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 ZIC2O95409 532 aaPredicted RBP11.9□□□□□ -0.5
NEDD8-204ENST00000526430 MAPTP10636 758 aaKnown RBP11.9□□□□□ -0.5
NEDD8-204ENST00000526430 ITGA4P13612 1032 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 MLH1P40692 756 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 CASP5P51878 434 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 GTF2BQ00403 316 aa11.9□□□□□ -0.5
NEDD8-204ENST00000526430 KCNA1Q09470 495 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms