RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TAP1Q03518 808 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 NEDD9Q14511 834 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 IZUMO3Q5VZ72 239 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 DYDC1Q8WWB3 177 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 MRPL4Q9BYD3 311 aaKnown RBP22.5■■□□□ 1.19
VPS28-205ENST00000526204 LGALS13Q9UHV8 139 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 DOCK5Q9H7D0 1870 aa22.5■■□□□ 1.19
VPS28-205ENST00000526204 TMEM120BA0PK00 339 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 FARP2O94887 1054 aaPredicted RBP22.49■■□□□ 1.19
VPS28-205ENST00000526204 EDN1P05305 212 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 IFNAR2P48551 515 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 COPS2P61201 443 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 STAT4Q14765 748 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 SURF1Q15526 300 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 PCYT2Q99447 389 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 SIP14410 1827 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 CDH16O75309 829 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 TGFB3P10600 412 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 HARSP12081 509 aaKnown RBP22.49■■□□□ 1.19
VPS28-205ENST00000526204 SSTR3P32745 418 aaPredicted RBP22.49■■□□□ 1.19
VPS28-205ENST00000526204 GJC1P36383 396 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 FSTL1Q12841 308 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 HIBCHQ6NVY1 386 aaPredicted RBP22.49■■□□□ 1.19
VPS28-205ENST00000526204 ZCCHC9Q8N567 271 aaKnown RBP22.49■■□□□ 1.19
VPS28-205ENST00000526204 TMEM35BQ8NCS4 154 aa22.49■■□□□ 1.19
VPS28-205ENST00000526204 ELAC2Q9BQ52 826 aaKnown RBP22.49■■□□□ 1.19
VPS28-205ENST00000526204 LIASO43766 372 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 SGSM1Q2NKQ1 1148 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 FAM167AQ96KS9 214 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 TCHPQ9BT92 498 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 NIF3L1Q9GZT8 377 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 SLC40A1Q9NP59 571 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 DNAJC17Q9NVM6 304 aaKnown RBP22.48■■□□□ 1.19
VPS28-205ENST00000526204 CST3P01034 146 aaPredicted RBP22.48■■□□□ 1.19
VPS28-205ENST00000526204 ABHD2P08910 425 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 EDNRBP24530 442 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 RPL7AP62424 266 aaKnown RBP22.48■■□□□ 1.19
VPS28-205ENST00000526204 DUOXA2Q1HG44 320 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 SEZ6Q53EL9 994 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 IER5Q5VY09 327 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 DNAJC24Q6P3W2 148 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 VSTM1Q6UX27 236 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 LBX2Q6XYB7 198 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 PRPF31Q8WWY3 499 aaKnown RBP22.48■■□□□ 1.19
VPS28-205ENST00000526204 SEPT1Q8WYJ6 367 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 FAM212AQ96EL1 285 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 SLITRK1Q96PX8 696 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 KLC4Q9NSK0 619 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 ACTL7BQ9Y614 415 aa22.48■■□□□ 1.19
VPS28-205ENST00000526204 GAS2O43903 313 aaKnown RBP22.47■■□□□ 1.19
VPS28-205ENST00000526204 FAM189A1O60320 539 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 MSCO60682 206 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 DNAJC8O75937 253 aaPredicted RBP22.47■■□□□ 1.19
VPS28-205ENST00000526204 GSTA1P08263 222 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 PTPN7P35236 360 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 PIGHQ14442 188 aaPredicted RBP22.47■■□□□ 1.19
VPS28-205ENST00000526204 SPRED3Q2MJR0 410 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 EXOC8Q8IYI6 725 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 RIBC1Q8N443 379 aaPredicted RBP22.47■■□□□ 1.19
VPS28-205ENST00000526204 TCP11Q8WWU5 503 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 UTRNP46939 3433 aa22.47■■□□□ 1.19
VPS28-205ENST00000526204 NDC80O14777 642 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 OGTO15294 1046 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 KRT1P04264 644 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 MXD4Q14582 209 aaPredicted RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 P3H1Q32P28 736 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 EAPPQ56P03 285 aaPredicted RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 ZFYVE27Q5T4F4 411 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 DCUN1D2Q6PH85 259 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 ANKS1BQ7Z6G8 1248 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 RIOX2Q8IUF8 465 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 FAM118BQ9BPY3 351 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 KCNK9Q9NPC2 374 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 CISHQ9NSE2 258 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 DDX56Q9NY93 547 aaKnown RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 DRG1Q9Y295 367 aaKnown RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 TCRBV5S1A1TA0A578 114 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 EIF4BP23588 611 aaKnown RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 TNFSF9P41273 254 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 MYL6P60660 151 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 CDCA2Q69YH5 1023 aaPredicted RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 CHADLQ6NUI6 762 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 METTL7BQ6UX53 244 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 RBM15Q96T37 977 aaKnown RBP eCLIP22.46■■□□□ 1.19
VPS28-205ENST00000526204 ACO2Q99798 780 aaKnown RBP22.46■■□□□ 1.19
VPS28-205ENST00000526204 MTMR12Q9C0I1 747 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 MTFR1LQ9H019 292 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 CEP83Q9Y592 693 aa22.46■■□□□ 1.19
VPS28-205ENST00000526204 SNX3O60493 162 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 GJB6O95452 261 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 BRAFP15056 766 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 CDH5P33151 784 aaPredicted RBP22.45■■□□□ 1.18
VPS28-205ENST00000526204 TCF7P36402 384 aaPredicted RBP22.45■■□□□ 1.18
VPS28-205ENST00000526204 MAGEA4P43358 317 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 MNAT1P51948 309 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 XRCC4Q13426 336 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 TRPC3Q13507 836 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 ZBTB33Q86T24 672 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 ZBTB8OSQ8IWT0 167 aa22.45■■□□□ 1.18
VPS28-205ENST00000526204 CFAP57Q96MR6 1250 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms