RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 TMEM209Q96SK2 561 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 SCNM1Q9BWG6 230 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 ADAM33Q9BZ11 813 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 GPR88Q9GZN0 384 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 DNAJC25Q9H1X3 360 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 BRMS1Q9HCU9 246 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 ORC3Q9UBD5 711 aaPredicted RBP12.72□□□□□ -0.37
SDCBP-211ENST00000523441 TUBGCP4Q9UGJ1 667 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 LHX6Q9UPM6 363 aa12.72□□□□□ -0.37
SDCBP-211ENST00000523441 SRRM3A6NNA2 597 aaPredicted RBP12.71□□□□□ -0.37
SDCBP-211ENST00000523441 RNF40O75150 1001 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 CAVIN2O95810 425 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 EGFP01133 1207 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 CYP11B2P19099 503 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 GRM5P41594 1212 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 EPHA5P54756 1037 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 RING1Q06587 406 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 MRPL58Q14197 206 aaKnown RBP12.71□□□□□ -0.37
SDCBP-211ENST00000523441 ELF2Q15723 593 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 ITPRIPL2Q3MIP1 535 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 PLK5Q496M5 336 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 ARHGAP15Q53QZ3 475 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 PLA2G2CQ5R387 149 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 C1orf228Q6PIY5 440 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 TTC30AQ86WT1 665 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 BPIFB1Q8TDL5 484 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 SUSD3Q96L08 255 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 TARS2Q9BW92 718 aaKnown RBP12.71□□□□□ -0.37
SDCBP-211ENST00000523441 TMEM60Q9H2L4 133 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 EBF3Q9H4W6 596 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 ZSWIM6Q9HCJ5 1215 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 GKN1Q9NS71 199 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 PDRG1Q9NUG6 133 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 ANKFY1Q9P2R3 1169 aa12.71□□□□□ -0.37
SDCBP-211ENST00000523441 CIZ1Q9ULV3 898 aaPredicted RBP12.71□□□□□ -0.37
SDCBP-211ENST00000523441 MYO16Q9Y6X6 1858 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 BTBD18B2RXH4 712 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 PATE3B3GLJ2 98 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 VNN2O95498 520 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 XRCC6P12956 609 aaKnown RBP eCLIP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 MATR3P43243 847 aaKnown RBP eCLIP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 MLLT6P55198 1093 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 PEX3P56589 373 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 CACNB1Q02641 598 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 YWHAHQ04917 246 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 GRSF1Q12849 480 aaKnown RBP eCLIP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 PLD1Q13393 1074 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 DAB2IPQ5VWQ8 1189 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 NAIF1Q69YI7 327 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 FSTL4Q6MZW2 842 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 DSTYKQ6XUX3 929 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 GAREM2Q75VX8 874 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 USP37Q86T82 979 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 ATAD1Q8NBU5 361 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 DEFB124Q8NES8 71 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 ZBTB45Q96K62 511 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 SEPT5Q99719 369 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 ACO2Q99798 780 aaKnown RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 LPIN3Q9BQK8 851 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 LRRC3Q9BY71 257 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 DUSP15Q9H1R2 295 aaPredicted RBP12.7□□□□□ -0.38
SDCBP-211ENST00000523441 TUFT1Q9NNX1 390 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 PCDHB8Q9UN66 801 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 TNFSF13BQ9Y275 285 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 NBEAQ8NFP9 2946 aa12.7□□□□□ -0.38
SDCBP-211ENST00000523441 FASNP49327 2511 aaKnown RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 ADAMTS9Q9P2N4 1935 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 TULP1O00294 542 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 RPL9P32969 192 aaKnown RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 GUCY2FP51841 1108 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 DGKEP52429 567 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 EFNA5P52803 228 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 TAF12Q16514 161 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 ALKAL1Q6UXT8 129 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 DNAJB7Q7Z6W7 309 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 ABCA7Q8IZY2 2146 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 FAM177A1Q8N128 213 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 SYNPOQ8N3V7 929 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 NECAB1Q8N987 351 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 KDF1Q8NAX2 398 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 RPLP0P6Q8NHW5 317 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 GIPC2Q8TF65 315 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 MKNK1Q9BUB5 465 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 POLR3CQ9BUI4 534 aaPredicted RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 MRPL4Q9BYD3 311 aaKnown RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 TPSD1Q9BZJ3 242 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 BHMT2Q9H2M3 363 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 THG1LQ9NWX6 298 aaKnown RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 PCDHGA5Q9Y5G8 931 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 WDFY3Q8IZQ1 3526 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 DSPP15924 2871 aaKnown RBP12.69□□□□□ -0.38
SDCBP-211ENST00000523441 MYH11P35749 1972 aa12.69□□□□□ -0.38
SDCBP-211ENST00000523441 PKD1L2Q7Z442 2459 aa12.68□□□□□ -0.38
SDCBP-211ENST00000523441 STK36Q9NRP7 1315 aa12.68□□□□□ -0.38
SDCBP-211ENST00000523441 LNP1A1A4G5 178 aa12.68□□□□□ -0.38
SDCBP-211ENST00000523441 MEFVO15553 781 aaPredicted RBP12.68□□□□□ -0.38
SDCBP-211ENST00000523441 HYAL3O43820 417 aaPredicted RBP12.68□□□□□ -0.38
SDCBP-211ENST00000523441 ATG13O75143 517 aa12.68□□□□□ -0.38
SDCBP-211ENST00000523441 RHOBTB1O94844 696 aa12.68□□□□□ -0.38
SDCBP-211ENST00000523441 ZIC2O95409 532 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms