RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 RXFP1Q9HBX9 757 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GALNT9Q9HCQ5 603 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 CD248Q9HCU0 757 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZCCHC17Q9NP64 241 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALG13Q9NP73 1137 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 EMC7Q9NPA0 242 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL23AQ9NPF7 189 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPRC5CQ9NQ84 441 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 WASH6PQ9NQA3 447 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 STARD7Q9NQZ5 370 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SH3GLB2Q9NR46 395 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF277Q9NRM2 450 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 TOPORSQ9NS56 1045 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMC4Q9NTJ3 1288 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 BLOC1S4Q9NUP1 217 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPTLC3Q9NUV7 552 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLR3BQ9NW08 1133 aaPredicted RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 C14orf119Q9NWQ9 140 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 NSMCE4AQ9NXX6 385 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SAGE1Q9NXZ1 904 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 RRN3Q9NYV6 651 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 MOCS1Q9NZB8 636 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 SAMD15Q9P1V8 674 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FNIP2Q9P278 1114 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 EPS15L1Q9UBC2 864 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 B4GALT6Q9UBX8 382 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABCF2Q9UG63 623 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 NOL12Q9UGY1 213 aaKnown RBP eCLIP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 NDOR1Q9UHB4 597 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX20Q9UHI6 824 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 ISY1Q9ULR0 285 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHB10Q9UN67 800 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 L1RE1Q9UN81 338 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 DNM3Q9UQ16 869 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR52Q9Y2T5 361 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHB1Q9Y5F3 818 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGB3Q9Y5G1 929 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA9Q9Y5G4 932 aaKnown RBP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA8Q9Y5G5 932 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA7Q9Y5G6 932 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA6Q9Y5G7 932 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA3Q9Y5H0 932 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHGA2Q9Y5H1 932 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHA9Q9Y5H5 950 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 UTP18Q9Y5J1 556 aaKnown RBP eCLIP0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 NPFFR2Q9Y5X5 522 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 COX11Q9Y6N1 276 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 FPGT-TNNI3KV9GXZ4 949 aa0.67□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP19O94966 1318 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 XDHP47989 1333 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLSPNQ9HAW4 1339 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CNTNAP2Q9UHC6 1331 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A087WV62 115 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A087X0M5 115 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A088AWK7 358 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A1B0GX30 115 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPDC1A2A3K4 754 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC66A2RUB6 948 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GOLGA6L3A6NEY3 463 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CAPN8A6NHC0 703 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RRN3P2A6NIE6 340 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 RHPN2P1A8MT19 583 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF891A8MT65 544 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMTNL1A8MU46 457 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ISM1B1AKI9 464 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 B4E171 279 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBE2Q2LH0YL09 131 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 H3BNC9 293 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 M0R3H8 397 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 EYA2O00167 538 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARVCFO00192 962 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 EIF3FO00303 357 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TOR1BO14657 336 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 WNT9AO14904 365 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLGNO14967 610 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HNRNPDLO14979 420 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADAMTS3O15072 1205 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC16A6O15403 523 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 IRAK2O43187 625 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HOXC11O43248 304 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 XPOTO43592 962 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXS1O43638 330 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 NARSO43776 548 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 MGEA5O60502 916 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLA2G6O60733 806 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DKC1O60832 514 aaKnown RBP eCLIP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DNAJA2O60884 412 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 DTNBO60941 627 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZBED4O75132 1171 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 HMMRO75330 724 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBCAO75347 108 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 SKAP2O75563 359 aaPredicted RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TIPRLO75663 272 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GLRX3O76003 335 aaKnown RBP0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDKL5O76039 1030 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 FGF18O76093 207 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 GFPT2O94808 682 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM63AO94886 807 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBXN7O94888 489 aa0.66□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL18RAPO95256 599 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms