RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 CXCL16Q9H2A7 254 aa10.9□□□□□ -0.66
NEDD9-214ENST00000513989 EPHX3Q9H6B9 360 aa10.9□□□□□ -0.66
NEDD9-214ENST00000513989 CWH43Q9H720 699 aa10.9□□□□□ -0.66
NEDD9-214ENST00000513989 VRTNQ9H8Y1 702 aa10.9□□□□□ -0.66
NEDD9-214ENST00000513989 GRPEL1Q9HAV7 217 aa10.9□□□□□ -0.66
NEDD9-214ENST00000513989 RC3H2Q9HBD1 1191 aaKnown RBP10.9□□□□□ -0.66
NEDD9-214ENST00000513989 C11orf16Q9NQ32 467 aa10.9□□□□□ -0.66
NEDD9-214ENST00000513989 PRG3Q9Y2Y8 225 aaPredicted RBP10.9□□□□□ -0.66
NEDD9-214ENST00000513989 MRPL42Q9Y6G3 142 aaKnown RBP10.9□□□□□ -0.66
NEDD9-214ENST00000513989 PTPRJQ12913 1337 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 A0A1W2PQC6 194 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 TMEM189-UBE2V1I3L0A0 370 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 CYB561D2O14569 222 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 ASS1P00966 412 aaKnown RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 RB1P06400 928 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 TBXAS1P24557 533 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 PON1P27169 355 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 BMPR1AP36894 532 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 SLC11A1P49279 550 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 GUCY2FP51841 1108 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 MYL6P60660 151 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 SOX4Q06945 474 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 EPC2Q52LR7 807 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 SMYD5Q6GMV2 418 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 DPH6Q7L8W6 267 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 APTXQ7Z2E3 356 aaKnown RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 DRC7Q8IY82 874 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 ZNF397Q8NF99 534 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 NEK11Q8NG66 645 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 ERGIC2Q96RQ1 377 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 XPO4Q9C0E2 1151 aaKnown RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 FAM124BQ9H5Z6 455 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 CYP3A43Q9HB55 503 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 GOLGA2P5Q9HBQ8 144 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 PLCB1Q9NQ66 1216 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 GDAP2Q9NXN4 497 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 NXF1Q9UBU9 619 aaKnown RBP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 DNAJB4Q9UDY4 337 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 SIX4Q9UIU6 781 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 ADAM28Q9UKQ2 775 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.89□□□□□ -0.67
NEDD9-214ENST00000513989 SNX9Q9Y5X1 595 aa10.89□□□□□ -0.67
NEDD9-214ENST00000513989 SF3B1O75533 1304 aaKnown RBP eCLIP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 GOLGA6L6A8MZA4 724 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 TEX33O43247 280 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 VNN1O95497 513 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 ODC1P11926 461 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 RFX1P22670 979 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 MFAP3P55082 362 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 NOP14P78316 857 aaKnown RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 SYCP1Q15431 976 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 TSR1Q2NL82 804 aaKnown RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 KIAA1841Q6NSI8 718 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 PDXDC1Q6P996 788 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 PPFIBP1Q86W92 1011 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 FMNL3Q8IVF7 1028 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 THEM5Q8N1Q8 247 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 PPM1KQ8N3J5 372 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 TOP6BLQ8N6T0 577 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 COLGALT1Q8NBJ5 622 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 FBXO22Q8NEZ5 403 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 SEMA4DQ92854 862 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 JAKMIP2Q96AA8 810 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 IGSF21Q96ID5 467 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 C11orf84Q9BUA3 381 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 LSM14BQ9BX40 385 aaKnown RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 UBE2ZQ9H832 354 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 UBE2TQ9NPD8 197 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-214ENST00000513989 APEX2Q9UBZ4 518 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 SSX2IPQ9Y2D8 614 aa10.88□□□□□ -0.67
NEDD9-214ENST00000513989 FSD2A1L4K1 749 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 NT5C1B-RDH14C9J2C7 533 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 H3BNC9 293 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 SYN3O14994 580 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 CCDC172P0C7W6 258 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 SLC9A1P19634 815 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 CTNNB1P35222 781 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 GNL1P36915 607 aaPredicted RBP10.87□□□□□ -0.67
NEDD9-214ENST00000513989 LHX1P48742 406 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 PLCB3Q01970 1234 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 GCNT1Q02742 428 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 LRMPQ12912 555 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 COL19A1Q14993 1142 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 USP41Q3LFD5 358 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 KLHDC7AQ5VTJ3 777 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 SPECC1LQ69YQ0 1117 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 TRIM65Q6PJ69 517 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 CACNA2D4Q7Z3S7 1137 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 DDX53Q86TM3 631 aaKnown RBP10.87□□□□□ -0.67
NEDD9-214ENST00000513989 TMEM86AQ8N2M4 240 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 CXorf38Q8TB03 319 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 SPATA18Q8TC71 538 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 RABGGTAQ92696 567 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 TATDN2Q93075 761 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 MRPL38Q96DV4 380 aaKnown RBP10.87□□□□□ -0.67
NEDD9-214ENST00000513989 MRFAP1L1Q96HT8 127 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 SUSD3Q96L08 255 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 SENP8Q96LD8 212 aa10.87□□□□□ -0.67
NEDD9-214ENST00000513989 PAAF1Q9BRP4 392 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms