RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 OXCT2Q9BYC2 517 aaPredicted RBP11.97□□□□□ -0.49
DDX41-216ENST00000513562 TPCN1Q9ULQ1 816 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 CYP46A1Q9Y6A2 500 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 GREB1Q4ZG55 1949 aa11.97□□□□□ -0.49
DDX41-216ENST00000513562 PHLPP2Q6ZVD8 1323 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 BCLAF3A2AJT9 711 aaKnown RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 MEFVO15553 781 aaPredicted RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 OAZ2O95190 189 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 FGF19O95750 216 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 CAVIN2O95810 425 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 CEACAM1P13688 526 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 CSRP1P21291 193 aaKnown RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 MCM2P49736 904 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 IRX6P78412 446 aaPredicted RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 YWHAHQ04917 246 aaPredicted RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 RING1Q06587 406 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 GRSF1Q12849 480 aaKnown RBP eCLIP11.96□□□□□ -0.49
DDX41-216ENST00000513562 DUSP4Q13115 394 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 GPR17Q13304 367 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 KARSQ15046 597 aaKnown RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 PTPAQ15257 358 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 ELF2Q15723 593 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 ZNF568Q3ZCX4 644 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 GPR158Q5T848 1215 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 LRSAM1Q6UWE0 723 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 KIFAP3Q92845 792 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 PSMG2Q969U7 264 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 CHFRQ96EP1 664 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 ACAP3Q96P50 834 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 PGLYRP2Q96PD5 576 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 ACO2Q99798 780 aaKnown RBP11.96□□□□□ -0.49
DDX41-216ENST00000513562 SCNM1Q9BWG6 230 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 ATXN3LQ9H3M9 355 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 LHX6Q9UPM6 363 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 ASB3Q9Y575 518 aa11.96□□□□□ -0.49
DDX41-216ENST00000513562 PKD1L2Q7Z442 2459 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 FREM2Q5SZK8 3169 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 K7ERI5 159 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 M0QZQ0 153 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 ABLIM1O14639 778 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 TRDMT1O14717 391 aaKnown RBP11.95□□□□□ -0.5
DDX41-216ENST00000513562 RNF40O75150 1001 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 RHOBTB1O94844 696 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 OR4Q2P0C623 313 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 MCF2P10911 925 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 PROZP22891 400 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 RPA1P27694 616 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 GABRR2P28476 465 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 MARCKSP29966 332 aaPredicted RBP11.95□□□□□ -0.5
DDX41-216ENST00000513562 ALDH1A3P47895 512 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 CREB5Q02930 508 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 ARHGAP15Q53QZ3 475 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 DNAJB7Q7Z6W7 309 aaPredicted RBP11.95□□□□□ -0.5
DDX41-216ENST00000513562 ZCCHC14Q8WYQ9 949 aaKnown RBP11.95□□□□□ -0.5
DDX41-216ENST00000513562 HHIPQ96QV1 700 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 TMEM60Q9H2L4 133 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 TASP1Q9H6P5 420 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 BRMS1Q9HCU9 246 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 POLR3BQ9NW08 1133 aaPredicted RBP11.95□□□□□ -0.5
DDX41-216ENST00000513562 TUBGCP4Q9UGJ1 667 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 DMXL2Q8TDJ6 3036 aa11.95□□□□□ -0.5
DDX41-216ENST00000513562 OR6C75A6NL08 312 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 DCLK1O15075 740 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 DTNBO60941 627 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 AARSP49588 968 aaKnown RBP eCLIP11.94□□□□□ -0.5
DDX41-216ENST00000513562 RUNX3Q13761 415 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 CENPPQ6IPU0 288 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 TAS1R3Q7RTX0 852 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 FAM83CQ9BQN1 747 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 TARS2Q9BW92 718 aaKnown RBP11.94□□□□□ -0.5
DDX41-216ENST00000513562 MRPL4Q9BYD3 311 aaKnown RBP11.94□□□□□ -0.5
DDX41-216ENST00000513562 TM6SF1Q9BZW5 370 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 TMEM134Q9H6X4 195 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 POLD4Q9HCU8 107 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 TMEM9BQ9NQ34 198 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 HPS4Q9NQG7 708 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 THG1LQ9NWX6 298 aaKnown RBP11.94□□□□□ -0.5
DDX41-216ENST00000513562 ORC3Q9UBD5 711 aaPredicted RBP11.94□□□□□ -0.5
DDX41-216ENST00000513562 EBF1Q9UH73 591 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 NEUROG3Q9Y4Z2 214 aa11.94□□□□□ -0.5
DDX41-216ENST00000513562 TIMM13Q9Y5L4 95 aaPredicted RBP11.94□□□□□ -0.5
DDX41-216ENST00000513562 FASNP49327 2511 aaKnown RBP11.94□□□□□ -0.5
DDX41-216ENST00000513562 NBEAQ8NFP9 2946 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 AKAP13Q12802 2813 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 ITPR1Q14643 2758 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 MTMR11A4FU01 709 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 OTOL1A6NHN0 477 aaPredicted RBP11.93□□□□□ -0.5
DDX41-216ENST00000513562 CDX4O14627 284 aaPredicted RBP11.93□□□□□ -0.5
DDX41-216ENST00000513562 REC8O95072 547 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 CTDNEP1O95476 244 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 APBB3O95704 486 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 EGFP01133 1207 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 MUTP22033 750 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 NPTX2P47972 431 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 CYP4F8P98187 520 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 MYBPC2Q14324 1141 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 SLC10A6Q3KNW5 377 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 MPZL3Q6UWV2 235 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 SYT13Q7L8C5 426 aa11.93□□□□□ -0.5
DDX41-216ENST00000513562 ITIH5Q86UX2 942 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms