RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 C2orf69Q8N8R5 385 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 NT5C1AQ9BXI3 368 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 DONSONQ9NYP3 566 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 APOBEC2Q9Y235 224 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 VWA5AO00534 786 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PPP1R12AO14974 1030 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 PLSCR1O15162 318 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 CREB3O43889 395 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 HSPA4LO95757 839 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 SKIP12755 728 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 GPD1P21695 349 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 CXCL9Q07325 125 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 ITPRIPL1Q6GPH6 555 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 NUF2Q9BZD4 464 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 MAGED2Q9UNF1 606 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 ALS2Q96Q42 1657 aa11.33□□□□□ -0.6
LIMCH1-205ENST00000503057 RBAK-RBAKDNI3L0D1 243 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PDE2AO00408 941 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 AP1B1Q10567 949 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PRAMEF18Q5VWM3 479 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 C4orf22Q6V702 233 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 TRPM8Q7Z2W7 1104 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 RASSF3Q86WH2 238 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 MAP4K3Q8IVH8 894 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ABI1Q8IZP0 508 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 OR6J1Q8NGC5 347 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 EXD1Q8NHP7 514 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PAK5Q9P286 719 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 NCANO14594 1321 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ZWINTO95229 277 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 NCF2P19878 526 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 DSG3P32926 999 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ERVK-9P63128 1117 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SLC30A10Q6XR72 485 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SCFD2Q8WU76 684 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 WDR18Q9BV38 432 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 METTL5Q9NRN9 209 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 EPS15L1Q9UBC2 864 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 CCT8L1PA6NM43 557 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 TBC1D12O60347 775 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SPATA31C1P0DKV0 1188 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 COPS2P61201 443 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 STX1BP61266 288 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 MCL1Q07820 350 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SH2D4BQ5SQS7 431 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 RWDD4Q6NW29 188 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SLC9A9Q8IVB4 645 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 CEP120Q8N960 986 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 NKX2-3Q8TAU0 364 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 RAPGEF5Q92565 580 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 NUDCD1Q96RS6 583 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SERPINI1Q99574 410 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 FAM118BQ9BPY3 351 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 DCTN4Q9UJW0 460 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 RNF225M0QZC1 329 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 LCP1P13796 627 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SNAPC2Q13487 334 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ITIH4Q14624 930 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 DBN1Q16643 649 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 FSCBQ5H9T9 825 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 MPZL3Q6UWV2 235 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 TMC3Q7Z5M5 1100 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 DNAAF5Q86Y56 855 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 NUDCD3Q8IVD9 361 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 TRIM56Q9BRZ2 755 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 TRIM62Q9BVG3 475 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PHLPP1O60346 1717 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 TRPM3Q9HCF6 1732 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 CST8O60676 142 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ITGA4P13612 1032 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 RRM1P23921 792 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 FBXO25Q8TCJ0 367 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 EPS8L3Q8TE67 593 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 ZNF384Q8TF68 577 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PRPF31Q8WWY3 499 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 N4BP2L2Q92802 583 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PCDHA3Q9Y5H8 950 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 SNX9Q9Y5X1 595 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 USH1CQ9Y6N9 552 aa11.32□□□□□ -0.6
LIMCH1-205ENST00000503057 PKD1L3Q7Z443 1732 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 OPHN1O60890 802 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 PPP1R11O60927 126 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 LCA5LO95447 670 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 KCNA1Q09470 495 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 LAMC2Q13753 1193 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 SEPT6Q14141 434 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 PSMD6Q15008 389 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CCNG2Q16589 344 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CYP4A22Q5TCH4 519 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 KLC3Q6P597 504 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 MCOLN2Q8IZK6 566 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 APPL2Q8NEU8 664 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 FRMD8Q9BZ67 464 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 ZBTB39O15060 712 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 PLA2G6O60733 806 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 CD4P01730 458 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 FAM153BP0C7A2 387 aa11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 ZNF200P98182 395 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-205ENST00000503057 FAM153CQ494X1 144 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms