RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SPATA18Q8TC71 538 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 KRIT1O00522 736 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 NEBLO76041 1014 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 KRT7P08729 469 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 SELPP16109 830 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 GNL1P36915 607 aaPredicted RBP8.89□□□□□ -0.99
USP54-215ENST00000497106 TNFSF9P41273 254 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 GRIK3Q13003 919 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 HLTFQ14527 1009 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP54-215ENST00000497106 IRF2BP2Q7Z5L9 587 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 ZDHHC17Q8IUH5 632 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 BBOF1Q8ND07 529 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 SLC35G2Q8TBE7 412 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 SIX2Q9NPC8 291 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 SNX12Q9UMY4 172 aa8.89□□□□□ -0.99
USP54-215ENST00000497106 CAPN9O14815 690 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 PLEKP08567 350 aaPredicted RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 GHRP10912 638 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 PROZP22891 400 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 RHOT1Q8IXI2 618 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 CCHCR1Q8TD31 782 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 EPS8L1Q8TE68 723 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 HAUS1Q96CS2 278 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 OSBPL9Q96SU4 736 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 FAM105AQ9NUU6 356 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 FLRT1Q9NZU1 646 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 EPHB6O15197 1021 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 FTCDO95954 541 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 GJB1P08034 283 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 NFICP08651 508 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 PSMC1P62191 440 aaKnown RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 CLDN10P78369 228 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 ZNF394Q53GI3 561 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 C4orf50Q6ZRC1 276 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 RPAINQ86UA6 219 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 TOP6BLQ8N6T0 577 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 ZNF784Q8NCA9 323 aaPredicted RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 HELQQ8TDG4 1101 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 STAP1Q9ULZ2 295 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 IPPQ9Y573 584 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 ARVCFO00192 962 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 DNM1LO00429 736 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 CCND3P30281 292 aaPredicted RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 CALCOCO2Q13137 446 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 SERINC5Q86VE9 423 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 CNPY4Q8N129 248 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 TPCN2Q8NHX9 752 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 ZNF296Q8WUU4 475 aaPredicted RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 TSC1Q92574 1164 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 LENG1Q96BZ8 264 aaPredicted RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 ADAMTS10Q9H324 1103 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 EHD2Q9NZN4 543 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 H7C4K7 107 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 WEE2P0C1S8 567 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 FGFR4P22455 802 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 PSMA2P25787 234 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 BCAT1P54687 386 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 MKRN4PQ13434 485 aaPredicted RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 PPP1R7Q15435 360 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 PAPD7Q5XG87 772 aaKnown RBP8.88□□□□□ -0.99
USP54-215ENST00000497106 ADGRF2Q8IZF7 708 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 OR5B17Q8NGF7 314 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 KAT2BQ92831 832 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 TSPYL1Q9H0U9 437 aa8.88□□□□□ -0.99
USP54-215ENST00000497106 DDX3XO00571 662 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP54-215ENST00000497106 KRT81Q14533 505 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 ELMSAN1Q6PJG2 1045 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 RUFY4Q6ZNE9 571 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 L2HGDHQ9H9P8 463 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 ENC1O14682 589 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 STK10O94804 968 aaKnown RBP8.87□□□□□ -0.99
USP54-215ENST00000497106 MMEP08473 750 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 HGSNATQ68CP4 663 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 ZNF365Q70YC5 407 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 CROCCP2Q86T23 111 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 PASD1Q8IV76 773 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 TTC13Q8NBP0 860 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 PTPRHQ9HD43 1115 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 CNTN3Q9P232 1028 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 KPNA7A9QM74 516 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 ZBTB42B2RXF5 422 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 GOLGA8SH3BPF8 625 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 PRPSAP2O60256 369 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 FBXO21O94952 628 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 EOMESO95936 686 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 GSTA5Q7RTV2 222 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 CTU1Q7Z7A3 348 aaKnown RBP8.87□□□□□ -0.99
USP54-215ENST00000497106 SLC47A2Q86VL8 602 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 LINC01465Q8N7H1 131 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 WDR24Q96S15 920 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 ADAM2Q99965 735 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP54-215ENST00000497106 ARHGAP39Q9C0H5 1083 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 HAUS2Q9NVX0 235 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 STIM2Q9P246 746 aa8.87□□□□□ -0.99
USP54-215ENST00000497106 CYB561D2O14569 222 aa8.86□□□□□ -0.99
USP54-215ENST00000497106 CSDE1O75534 798 aaKnown RBP8.86□□□□□ -0.99
USP54-215ENST00000497106 KRT1P04264 644 aa8.86□□□□□ -0.99
USP54-215ENST00000497106 SDC4P31431 198 aa8.86□□□□□ -0.99
USP54-215ENST00000497106 GOLGA7BQ2TAP0 167 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms