RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 INVSQ9Y283 1065 aa5.63□□□□□ -1.51
CSMD3-208ENST00000497026 RIPK3Q9Y572 518 aa5.63□□□□□ -1.51
CSMD3-208ENST00000497026 ZNF536O15090 1300 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 MCM3APO60318 1980 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 MROH6A6NGR9 719 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 SLC15A5A6NIM6 579 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 K7ESM1 405 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 HMGCRP04035 888 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 GJB1P08034 283 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 HOXC6P09630 235 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 SNHG28P0DPA3 235 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 PDHBP11177 359 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 TOP1P11387 765 aaKnown RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 MCCP23508 829 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 ADORA2AP29274 412 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 GTF2F1P35269 517 aaKnown RBP eCLIP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 RGS2P41220 211 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 STAT2P52630 851 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 MLLT6P55198 1093 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 UBXN2AP68543 259 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 NFKB2Q00653 900 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 IFRD2Q12894 506 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 IMMTQ16891 758 aaKnown RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 KLHL40Q2TBA0 621 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 WDR78Q5VTH9 848 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 KCTD1Q719H9 257 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 CYB5R4Q7L1T6 521 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 PDCL2Q8N4E4 241 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 DCAF4Q8WV16 495 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 RUFY2Q8WXA3 655 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 MAP4K1Q92918 833 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 LSG1Q9H089 658 aaKnown RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 SMOC1Q9H4F8 434 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 RNF41Q9H4P4 317 aaPredicted RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 SLC38A10Q9HBR0 1119 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 SLC6A20Q9NP91 592 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 CALCOCO1Q9P1Z2 691 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 CGNQ9P2M7 1197 aaKnown RBP5.62□□□□□ -1.51
CSMD3-208ENST00000497026 TRAF6Q9Y4K3 522 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 MYH6P13533 1939 aa5.62□□□□□ -1.51
CSMD3-208ENST00000497026 TNKSO95271 1327 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 TRAV20A0A0B4J274 112 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 TMEM232C9JQI7 657 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 KRIT1O00522 736 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 ATP2A1O14983 1001 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 PLA2G6O60733 806 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 SGPL1O95470 568 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 CYP1A1P04798 512 aaPredicted RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 PTMAP06454 111 aaKnown RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 FGFR1P11362 822 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 STAT3P40763 770 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 SLC1A4P43007 532 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 PLS1Q14651 629 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 SEC23AQ15436 765 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 UBE2Q1Q7Z7E8 422 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 GGNQ86UU5 652 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 DGKHQ86XP1 1220 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 CPXCR1Q8N123 301 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 ENAHQ8N8S7 591 aaPredicted RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 PRPF38AQ8NAV1 312 aaKnown RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 U2AF1L4Q8WU68 220 aaKnown RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 ESR2Q92731 530 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 PDLIM2Q96JY6 352 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 TIGD1Q96MW7 591 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 TTC14Q96N46 770 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 CLIC6Q96NY7 704 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 TEX13BQ9BXU2 312 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 MROH8Q9H579 483 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 RAVER2Q9HCJ3 691 aaKnown RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 NGRNQ9NPE2 291 aaKnown RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 CTNNA3Q9UI47 895 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 FEM1BQ9UK73 627 aa5.61□□□□□ -1.51
CSMD3-208ENST00000497026 RBM8AQ9Y5S9 174 aaKnown RBP5.61□□□□□ -1.51
CSMD3-208ENST00000497026 FRMPD2Q68DX3 1309 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-208ENST00000497026 RPTORQ8N122 1335 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 E7EWF7 191 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 NKRFO15226 690 aaKnown RBP eCLIP5.6□□□□□ -1.51
CSMD3-208ENST00000497026 STRNO43815 780 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 SLC25A27O95847 323 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 PGK2P07205 417 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 CYBAP13498 195 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 ZKSCAN1P17029 563 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-208ENST00000497026 GRK2P25098 689 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 CCND3P30281 292 aaPredicted RBP5.6□□□□□ -1.51
CSMD3-208ENST00000497026 CYP2C19P33261 490 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 GRK3P35626 688 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 SLC16A2P36021 539 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 NT5C2P49902 561 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 OAZ1P54368 228 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 ANTXR2P58335 489 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 SNAP25P60880 206 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 CBX1P83916 185 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 ZNF543Q08ER8 600 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 TUSC3Q13454 348 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 NECTIN1Q15223 517 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 CCDC96Q2M329 555 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 SNRNP48Q6IEG0 339 aaKnown RBP5.6□□□□□ -1.51
CSMD3-208ENST00000497026 BTNL9Q6UXG8 535 aa5.6□□□□□ -1.51
CSMD3-208ENST00000497026 OTOP3Q7RTS5 596 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms