RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 UBXN6Q9BZV1 441 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 CYP4F11Q9HBI6 524 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 ASNSD1Q9NWL6 643 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 UVRAGQ9P2Y5 699 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 USP20Q9Y2K6 914 aa17.16■□□□□ 0.34
CCDC88B-209ENST00000494080 F5H423 210 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 ADORA2BP29275 332 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 MDH1BQ5I0G3 518 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 KCNV1Q6PIU1 500 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 CHST13Q8NET6 341 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 BEST2Q8NFU1 509 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 TNFRSF25Q93038 417 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 HIC2Q96JB3 615 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 SMYD2Q9NRG4 433 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 KRT3P12035 628 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 RARRES1P49788 294 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 CASP5P51878 434 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 KCTD19Q17RG1 926 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 ITIH2P19823 946 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 TFDP2Q14188 446 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 GCOM2Q9BZD3 368 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 OSGEPQ9NPF4 335 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 PXMP2Q9NR77 195 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 OLFML3Q9NRN5 406 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 SNX9Q9Y5X1 595 aa17.15■□□□□ 0.34
CCDC88B-209ENST00000494080 SGPL1O95470 568 aa17.14■□□□□ 0.34
CCDC88B-209ENST00000494080 TRADDQ15628 312 aa17.14■□□□□ 0.34
CCDC88B-209ENST00000494080 BTBD6Q96KE9 485 aa17.14■□□□□ 0.34
CCDC88B-209ENST00000494080 SCYL1Q96KG9 808 aa17.14■□□□□ 0.34
CCDC88B-209ENST00000494080 AGO4Q9HCK5 861 aaKnown RBP17.14■□□□□ 0.34
CCDC88B-209ENST00000494080 ARL4CP56559 192 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 ASPHQ12797 758 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 MED21Q13503 144 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 EFCAB12Q6NXP0 572 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 WDR75Q8IWA0 830 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 CD302Q8IX05 232 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 ANKRD13AQ8IZ07 590 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 MKL1Q969V6 931 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 ACAP3Q96P50 834 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 TRAF3IP3Q9Y228 551 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 KIF13AQ9H1H9 1805 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 ENO1P06733 434 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 RGS7P49802 495 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 KCNJ2P63252 427 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 ZNF507Q8TCN5 953 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 TAS1R2Q8TE23 839 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 BEGAINQ9BUH8 593 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 CCDC195A0A1B0GUA6 201 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 KIAA0391O15091 583 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 PCNX4Q63HM2 1172 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 LRRC43Q8N309 656 aa17.14■□□□□ 0.33
CCDC88B-209ENST00000494080 HNRNPCL1O60812 293 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 KRT7P08729 469 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 CDH6P55285 790 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 MTM1Q13496 603 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 QPCTQ16769 361 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 ACCSLQ4AC99 568 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 OR6J1Q8NGC5 347 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 ATL2Q8NHH9 583 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 RNF217Q8TC41 542 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 MMTAG2Q9BU76 263 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 KIAA1683Q9H0B3 1180 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SENP1Q9P0U3 644 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SMG5Q9UPR3 1016 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 GIPC1O14908 333 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 EXTL3O43909 919 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 LPXNO60711 386 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 DNAJC6O75061 913 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SERPINB3P29508 390 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 CPA2P48052 419 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 AP3M2P53677 418 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SYCP2LQ5T4T6 812 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SERPINB12Q96P63 405 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 MCEEQ96PE7 176 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 TRIM56Q9BRZ2 755 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 IQCA1LA6NCM1 817 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SMAD1Q15797 465 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 THEMIS2Q5TEJ8 643 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 TTC13Q8NBP0 860 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SCFD2Q8WU76 684 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 CCT6BQ92526 530 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC35C1Q96A29 364 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 RXFP1Q9HBX9 757 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 P4HA2O15460 535 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 KRT37O76014 449 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 VIL1P09327 827 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 RARGP13631 454 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 PGM5Q15124 567 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 ATF7IP2Q5U623 682 aa17.13■□□□□ 0.33
CCDC88B-209ENST00000494080 GRAP2O75791 330 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 TGFB2P61812 414 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 SNAPC2Q13487 334 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 SGSM1Q2NKQ1 1148 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 OLFML2BQ68BL8 750 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 ANKMY2Q8IV38 441 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 MREGQ8N565 214 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 RDM1Q8NG50 284 aa17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 KLF6Q99612 283 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 PIN4Q9Y237 131 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-209ENST00000494080 FAM208AQ9UK61 1670 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms