RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SNX9Q9Y5X1 595 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 FRMPD4Q14CM0 1322 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SSU72P8A0A1W2PR75 194 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ADORA2AP29274 412 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CCDC92Q53HC0 331 aaPredicted RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HSP90AA5PQ58FG0 334 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KCNT1Q5JUK3 1230 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ANKRD20A2Q5SQ80 823 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ANKRD20A1Q5TYW2 823 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ITFG2Q969R8 447 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SH3GL2Q99962 352 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 VPS37BQ9H9H4 285 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZNF214Q9UL59 606 aaPredicted RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PIN4Q9Y237 131 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 UBIAD1Q9Y5Z9 338 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GRID2IPA4D2P6 1211 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NOL4O94818 638 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 LMNAP02545 664 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 KRT1P04264 644 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 INSRRP14616 1297 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MYL6P60660 151 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BEX3Q00994 111 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DR1Q01658 176 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ERICH1Q86X53 443 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 C4orf19Q8IY42 314 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 LRRC34Q8IZ02 419 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 DAW1Q8N136 415 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SNRNP27Q8WVK2 155 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 PBKQ96KB5 322 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TLR10Q9BXR5 811 aa11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CORO1CQ9ULV4 474 aaPredicted RBP11.35□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TNRC6CQ9HCJ0 1690 aaKnown RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 IQCA1LA6NCM1 817 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TCP11X1B4DZS4 312 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 POC1B-GALNT4F8VUJ3 575 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SGK1O00141 431 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 EIF3DO15371 548 aaKnown RBP eCLIP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ATP4AP20648 1035 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ADORA2BP29275 332 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GTF2H1P32780 548 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 HSD17B3P37058 310 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GPC3P51654 580 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 BYSLQ13895 437 aaKnown RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ARHGEF18Q6ZSZ5 1173 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TMEM130Q8N3G9 435 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MORC4Q8TE76 937 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RFFLQ8WZ73 363 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RUNDC3BQ96NL0 473 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CYTH2Q99418 400 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ZCWPW1Q9H0M4 648 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TXNRD2Q9NNW7 524 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SEPT10Q9P0V9 454 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 C2CD2Q9Y426 696 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 IGSF9BQ9UPX0 1349 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 H0YCG3 227 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MAPK13O15264 365 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 NVLO15381 856 aaKnown RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TBC1D12O60347 775 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 UBOX5O94941 541 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 AGBL2Q5U5Z8 902 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TRIM74Q86UV6 250 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TRIM73Q86UV7 250 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RBBP8NLQ8NC74 664 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 EZH1Q92800 747 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 OSMRQ99650 979 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TMBIM4Q9HC24 238 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 SLC16A3O15427 465 aaKnown RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ITGB3P05106 788 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 GHRP10912 638 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RRM1P23921 792 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 RFC1P35251 1148 aaPredicted RBP11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MARCKSL1P49006 195 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CASC4Q6P4E1 433 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CPNE8Q86YQ8 564 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 MAP7D3Q8IWC1 876 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CHST13Q8NET6 341 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CAVIN3Q969G5 261 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 TMEM165Q9HC07 324 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 ARL2BPQ9Y2Y0 163 aa11.34□□□□□ -0.59
MSH5-SAPCD1-207ENST00000493662 CCDC189A1A4V9 331 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ARHGAP42A6NI28 874 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 CCDC188H7C350 402 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 M0QYV0 167 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 ATP5HO75947 161 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GLI1P08151 1106 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GSTA1P08263 222 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM153BP0C7A2 387 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 DUOXA2Q1HG44 320 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM153CQ494X1 144 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 EMC1Q8N766 993 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 C1orf131Q8NDD1 294 aaKnown RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 OR5B17Q8NGF7 314 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SCFD2Q8WU76 684 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 PRCCQ92733 491 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAXDC2Q96IV6 333 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 LRRC37BQ96QE4 947 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 FAM153AQ9UHL3 310 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 HEY1Q9Y5J3 304 aa11.33□□□□□ -0.6
MSH5-SAPCD1-207ENST00000493662 SLX4Q8IY92 1834 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms