RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CCDC169A6NNP5 214 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 LOC730098B7Z3J9 87 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 TGFBR3LH3BV60 316 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 SLC16A4O15374 487 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 FAM189A1O60320 539 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 MICAL2O94851 1124 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 RECKO95980 971 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 SSBP05455 408 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS52-219ENST00000493379 MCF2P10911 925 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 TCF3P15923 654 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 SNRPFP62306 86 aaKnown RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 FAM160A1Q05DH4 1040 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 DSC1Q08554 894 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 POU4F2Q12837 409 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 PRPF4BQ13523 1007 aaKnown RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 KCNB1Q14721 858 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 HIF1AQ16665 826 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 BMT2Q1RMZ1 405 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 COBLL1Q53SF7 1204 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 PPM1JQ5JR12 505 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 CLLU1OSQ5K130 101 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 ATF7IP2Q5U623 682 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 TWF2Q6IBS0 349 aaKnown RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 DYMQ7RTS9 669 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 CCDC65Q8IXS2 484 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 RASSF8Q8NHQ8 419 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 RNF217Q8TC41 542 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 GPR152Q8TDT2 470 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 SUSD3Q96L08 255 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 SCLT1Q96NL6 688 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 TGS1Q96RS0 853 aaKnown RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 TSPAN18Q96SJ8 248 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 KIFC3Q9BVG8 833 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 EIF2AQ9BY44 585 aaKnown RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 MRPL4Q9BYD3 311 aaKnown RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 NIF3L1Q9GZT8 377 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 PANK4Q9NVE7 773 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 RWDD3Q9Y3V2 267 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 IPPQ9Y573 584 aa7.36□□□□□ -1.23
VPS52-219ENST00000493379 GPC6Q9Y625 555 aaPredicted RBP7.36□□□□□ -1.23
VPS52-219ENST00000493379 TCHHQ07283 1943 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 MEIS3P2A8K0S8 358 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 H3BNC9 293 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 TAF4O00268 1085 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 EIF3DO15371 548 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS52-219ENST00000493379 TBCAO75347 108 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 PRPF40AO75400 957 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 RHOBTB3O94955 611 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 PROS1P07225 676 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 BMP2P12643 396 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 NMT1P30419 496 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 ADSSP30520 456 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 HOXD13P35453 343 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 UBE2HP62256 183 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 RAD51AP2Q09MP3 1159 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 COASYQ13057 564 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 CUL4BQ13620 913 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 MRPL58Q14197 206 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 DHX8Q14562 1220 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 ANGPT1Q15389 498 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 NAB2Q15742 525 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 KYAT1Q16773 422 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 DCAF4L1Q3SXM0 396 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 SOWAHCQ53LP3 525 aaPredicted RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 WDR44Q5JSH3 913 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 L1TD1Q5T7N2 865 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 EEF1DP3Q658K8 133 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 SLFN12LQ6IEE8 588 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 SLC39A4Q6P5W5 647 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 MPZL3Q6UWV2 235 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 PRICKLE2Q7Z3G6 844 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 SFR1Q86XK3 245 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 CEP57L1Q8IYX8 460 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 FIBCD1Q8N539 461 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 FSIP1Q8NA03 581 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 STAMQ92783 540 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 CPB2Q96IY4 423 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 GSDMAQ96QA5 445 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 YME1L1Q96TA2 773 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 C17orf80Q9BSJ5 609 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 TARS2Q9BW92 718 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 HAPLN2Q9GZV7 340 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 PLEKHA5Q9HAU0 1116 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 TYW1Q9NV66 732 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 DMGDHQ9UI17 866 aaKnown RBP7.35□□□□□ -1.23
VPS52-219ENST00000493379 MYO10Q9HD67 2058 aa7.35□□□□□ -1.23
VPS52-219ENST00000493379 ANKRD17O75179 2603 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 WDFY3Q8IZQ1 3526 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 TTC26A0AVF1 554 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 ARL5CA6NH57 179 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 C1QTNF9BB2RNN3 333 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 KIAA0391O15091 583 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 LINC01565O15544 149 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 MEFVO15553 781 aaPredicted RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 TGFB1I1O43294 461 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 TBX10O75333 385 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 KRT38O76015 456 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 KRT18P05783 430 aaKnown RBP7.34□□□□□ -1.23
VPS52-219ENST00000493379 C1QTNF9P0C862 333 aa7.34□□□□□ -1.23
VPS52-219ENST00000493379 FGFR1P11362 822 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms