RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 SLC35C1Q96A29 364 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 KLHL5Q96PQ7 755 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 OXCT2Q9BYC2 517 aaPredicted RBP11.69□□□□□ -0.54
VPS13D-210ENST00000489961 IGFLR1Q9H665 355 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 RXFP1Q9HBX9 757 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 MTRRQ9UBK8 725 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 SNX9Q9Y5X1 595 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 BACE2Q9Y5Z0 518 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 TSC2P49815 1807 aa11.69□□□□□ -0.54
VPS13D-210ENST00000489961 PER2O15055 1255 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 TEX28O15482 410 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 CLASP2O75122 1294 aaKnown RBP11.68□□□□□ -0.54
VPS13D-210ENST00000489961 OAZ2O95190 189 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 CYP11A1P05108 521 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 SRGAP2BP0DMP2 458 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 P4HA1P13674 534 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 MYL7Q01449 175 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 CETN1Q12798 172 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 MRPL58Q14197 206 aaKnown RBP11.68□□□□□ -0.54
VPS13D-210ENST00000489961 SKIV2LQ15477 1246 aaKnown RBP11.68□□□□□ -0.54
VPS13D-210ENST00000489961 CTXN3Q4LDR2 81 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 ZNF667Q5HYK9 610 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 SCARA3Q6AZY7 606 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 OVOS1Q6IE37 1185 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 DPH6Q7L8W6 267 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 THEM5Q8N1Q8 247 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 TMEM86AQ8N2M4 240 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 TOP6BLQ8N6T0 577 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 EFHBQ8N7U6 833 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 FBXL13Q8NEE6 735 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 MMS19Q96T76 1030 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 FUCA2Q9BTY2 467 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 VRTNQ9H8Y1 702 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 TIMM13Q9Y5L4 95 aaPredicted RBP11.68□□□□□ -0.54
VPS13D-210ENST00000489961 MYO7AQ13402 2215 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 TRANK1O15050 2925 aa11.68□□□□□ -0.54
VPS13D-210ENST00000489961 OR6C75A6NL08 312 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 SMTNL1A8MU46 457 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 P4HA2O15460 535 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 ASS1P00966 412 aaKnown RBP11.67□□□□□ -0.54
VPS13D-210ENST00000489961 AFPP02771 609 aaKnown RBP11.67□□□□□ -0.54
VPS13D-210ENST00000489961 RPL17P18621 184 aaKnown RBP11.67□□□□□ -0.54
VPS13D-210ENST00000489961 FMO5P49326 533 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 ZNF165P49910 485 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 KCNH2Q12809 1159 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 WDR72Q3MJ13 1102 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 CBWD6Q4V339 395 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 CBWD3Q5JTY5 395 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 CBWD5Q5RIA9 395 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 WSCD1Q658N2 575 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 ELMSAN1Q6PJG2 1045 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 EP400NLQ6ZTU2 488 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 IRF2BP1Q8IU81 584 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 GLYCTKQ8IVS8 523 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 SPATA18Q8TC71 538 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 TAS1R2Q8TE23 839 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 BPIFA3Q9BQP9 254 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 CLSTN3Q9BQT9 956 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 XYLT2Q9H1B5 865 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 SAMSN1Q9NSI8 373 aaKnown RBP11.67□□□□□ -0.54
VPS13D-210ENST00000489961 RAB20Q9NX57 234 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 CLDND1Q9NY35 253 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 NXF1Q9UBU9 619 aaKnown RBP11.67□□□□□ -0.54
VPS13D-210ENST00000489961 DPP7Q9UHL4 492 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 FBXL5Q9UKA1 691 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 CDY1Q9Y6F8 540 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 PLXNA3P51805 1871 aa11.67□□□□□ -0.54
VPS13D-210ENST00000489961 KCNJ18B7U540 433 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 PMM2O15305 246 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 CAVIN2O95810 425 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 GLUD1P00367 558 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 C1RP00736 705 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 TPM2P07951 284 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 FAM163BP0C2L3 166 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 EEF1GP26641 437 aaKnown RBP11.66□□□□□ -0.54
VPS13D-210ENST00000489961 OR1D2P34982 312 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 GTF2F1P35269 517 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS13D-210ENST00000489961 LHX1P48742 406 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 CLCN4P51793 760 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 ARPP19P56211 112 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 NOP14P78316 857 aaKnown RBP11.66□□□□□ -0.54
VPS13D-210ENST00000489961 ADAM15Q13444 863 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 RAB33AQ14088 237 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 KCNJ12Q14500 433 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 MAN2A1Q16706 1144 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 SOWAHAQ2M3V2 549 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 HSP90AA4PQ58FG1 418 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 WDR44Q5JSH3 913 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 SLC8B1Q6J4K2 584 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 LLGL2Q6P1M3 1020 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 PALB2Q86YC2 1186 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 ADGRF2Q8IZF7 708 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 PDCL2Q8N4E4 241 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 AOPEPQ8N6M6 819 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 ANKRD20A12PQ8NF67 263 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 SLC22A17Q8WUG5 538 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 CASP10Q92851 521 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 PABPC5Q96DU9 382 aaKnown RBP11.66□□□□□ -0.54
VPS13D-210ENST00000489961 TUBGCP2Q9BSJ2 902 aa11.66□□□□□ -0.54
VPS13D-210ENST00000489961 FANCLQ9NW38 375 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms