RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 BRSK2Q8IWQ3 736 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 FMR1NBQ8N0W7 255 aaPredicted RBP8.67□□□□□ -1.02
USP40-216ENST00000485943 ZNF507Q8TCN5 953 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 FAM200AQ8TCP9 573 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 SCFD1Q8WVM8 642 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 ASB2Q96Q27 587 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 PPP1R10Q96QC0 940 aaKnown RBP8.67□□□□□ -1.02
USP40-216ENST00000485943 OCSTAMPQ9BR26 566 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 SFXN1Q9H9B4 322 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 AGPAT3Q9NRZ7 376 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 CACNG4Q9UBN1 327 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 TUBGCP4Q9UGJ1 667 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 ITGA11Q9UKX5 1188 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 BARX2Q9UMQ3 279 aaPredicted RBP8.67□□□□□ -1.02
USP40-216ENST00000485943 AGAP1Q9UPQ3 857 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 PCDHGC5Q9Y5F6 944 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 TTC26A0AVF1 554 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 I3L4J1 428 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 BIN1O00499 593 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PES1O00541 588 aaKnown RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 PDXKO00764 312 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 ITGB3P05106 788 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PTMSP20962 102 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 TKTP29401 623 aaKnown RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 POLR2BP30876 1174 aaKnown RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 GTF2F1P35269 517 aaKnown RBP eCLIP8.66□□□□□ -1.02
USP40-216ENST00000485943 PIK3CAP42336 1068 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 MTHFRP42898 656 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 BRCC3P46736 316 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 AP3M2P53677 418 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PTPN5P54829 565 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 MYL7Q01449 175 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 TFF2Q03403 129 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 STK4Q13043 487 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 ADAM9Q13443 819 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 DCAF17Q5H9S7 520 aaPredicted RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 IQCEQ6IPM2 695 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PRSS55Q6UWB4 352 aaPredicted RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 TMEM173Q86WV6 379 aaPredicted RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 WDR49Q8IV35 697 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 B3GALT6Q96L58 329 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 FBXL18Q96ME1 805 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 NECTIN4Q96NY8 510 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 KLHL5Q96PQ7 755 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 FIZ1Q96SL8 496 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PAAF1Q9BRP4 392 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 OXCT2Q9BYC2 517 aaPredicted RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 GPR62Q9BZJ7 368 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 NUP62CLQ9H1M0 184 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PLEKHA4Q9H4M7 779 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PDE11AQ9HCR9 933 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PRDM6Q9NQX0 595 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 MAN1C1Q9NR34 630 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 MARCH5Q9NX47 278 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 MAGEC2Q9UBF1 373 aaPredicted RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 NR2E1Q9Y466 385 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 HCFC2Q9Y5Z7 792 aa8.66□□□□□ -1.02
USP40-216ENST00000485943 PDCD11Q14690 1871 aaKnown RBP8.66□□□□□ -1.02
USP40-216ENST00000485943 TCF20Q9UGU0 1960 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 FAM237AA0A1B0GTK4 181 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 TMEM189-UBE2V1I3L0A0 370 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 CYB561D2O14569 222 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 FSCN2O14926 492 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 TEX28O15482 410 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 CLASP2O75122 1294 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 GADD45BO75293 160 aaPredicted RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 MBD3O95983 291 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 CNPP09543 421 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 RPL17P18621 184 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 RFX1P22670 979 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 PSMC2P35998 433 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 ITIH3Q06033 890 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 PLD1Q13393 1074 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 ADAM15Q13444 863 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 SMAD4Q13485 552 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 VEPH1Q14D04 833 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 LEXMQ3ZCV2 418 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 WDR44Q5JSH3 913 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 ZBTB41Q5SVQ8 909 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 SPATA1Q5VX52 437 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 LMBRD2Q68DH5 695 aaPredicted RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 OVOS1Q6IE37 1185 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 ANKRD54Q6NXT1 300 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 SLC39A4Q6P5W5 647 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 SASS6Q6UVJ0 657 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 TMC5Q6UXY8 1006 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 INTS8Q75QN2 995 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 FAM186BQ8IYM0 893 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 DCP1BQ8IZD4 617 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 GUF1Q8N442 669 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 GSTCDQ8NEC7 633 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 KCNN1Q92952 543 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 ACSF2Q96CM8 615 aaPredicted RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 SUSD3Q96L08 255 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 ZMAT2Q96NC0 199 aaKnown RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 GCNAQ96QF7 691 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 UHRF1Q96T88 793 aaPredicted RBP8.65□□□□□ -1.02
USP40-216ENST00000485943 CGRRF1Q99675 332 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 FGFBP2Q9BYJ0 223 aa8.65□□□□□ -1.02
USP40-216ENST00000485943 MTMR12Q9C0I1 747 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms