RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 TRANK1O15050 2925 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 CITO14578 2027 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 PTPRJQ12913 1337 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 LRRIQ3A6PVS8 624 aaPredicted RBP15.28■□□□□ 0.04
BRCA1-211ENST00000472490 MBTPS2O43462 519 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 FGFR1OPO95684 399 aaKnown RBP15.28■□□□□ 0.04
BRCA1-211ENST00000472490 BMP6P22004 513 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 ELF1P32519 619 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 KCNQ1P51787 676 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 CLUL1Q15846 466 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 UVSSAQ2YD98 709 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 TPGS2Q68CL5 300 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 C15orf39Q6ZRI6 1047 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 CCDC149Q6ZUS6 474 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 DPH6Q7L8W6 267 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 TMEM86AQ8N2M4 240 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 KREMEN2Q8NCW0 462 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 CXorf38Q8TB03 319 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 NELFBQ8WX92 580 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 SYAP1Q96A49 352 aaPredicted RBP15.28■□□□□ 0.04
BRCA1-211ENST00000472490 RIPOR3Q96MK2 946 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 CEP63Q96MT8 703 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 NECTIN4Q96NY8 510 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 METTL14Q9HCE5 456 aaKnown RBP15.28■□□□□ 0.04
BRCA1-211ENST00000472490 ZDHHC7Q9NXF8 308 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 SIX4Q9UIU6 781 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 FBXL5Q9UKA1 691 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 TIMM13Q9Y5L4 95 aaPredicted RBP15.28■□□□□ 0.04
BRCA1-211ENST00000472490 SNX9Q9Y5X1 595 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 COL6A3P12111 3177 aa15.28■□□□□ 0.04
BRCA1-211ENST00000472490 PPP1R3GB7ZBB8 358 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 TBC1D4O60343 1298 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 STAU1O95793 577 aaKnown RBP15.27■□□□□ 0.04
BRCA1-211ENST00000472490 BMP1P13497 986 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 CPB1P15086 417 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 CD44P16070 742 aaKnown RBP15.27■□□□□ 0.04
BRCA1-211ENST00000472490 GTF2H1P32780 548 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 ARPP19P56211 112 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 ROR1Q01973 937 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 SMAD2Q15796 467 aaKnown RBP15.27■□□□□ 0.04
BRCA1-211ENST00000472490 ATAT1Q5SQI0 421 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 SYCE2Q6PIF2 218 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 ZC3H3Q8IXZ2 948 aaKnown RBP15.27■□□□□ 0.04
BRCA1-211ENST00000472490 TMEM130Q8N3G9 435 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 TOP6BLQ8N6T0 577 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 CMASQ8NFW8 434 aaPredicted RBP15.27■□□□□ 0.04
BRCA1-211ENST00000472490 BORCS6Q96GS4 357 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 RHOBTB2Q9BYZ6 727 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 S1PR5Q9H228 398 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 PRKAG3Q9UGI9 489 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 FBXW11Q9UKB1 542 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 CTNND2Q9UQB3 1225 aa15.27■□□□□ 0.04
BRCA1-211ENST00000472490 MYO9BQ13459 2157 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 EYSQ5T1H1 3165 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 TRIM49BA6NDI0 452 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 CLSTN1O94985 981 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 GNA14O95837 355 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 C4BPAP04003 597 aaKnown RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 HNRNPA1P09651 372 aaKnown RBP eCLIP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 FAM163BP0C2L3 166 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 P4HA1P13674 534 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 ATF2P15336 505 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 PTMSP20962 102 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 HOXA9P31269 272 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 MTHFRP42898 656 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 LHX1P48742 406 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 PMS1P54277 932 aaKnown RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 TNNC1P63316 161 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 DLG4P78352 724 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 SMARCB1Q12824 385 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 NCOA4Q13772 614 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 ZACNQ401N2 412 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 RARS2Q5T160 578 aaKnown RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 TTI2Q6NXR4 508 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 RSPO2Q6UXX9 243 aaPredicted RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 FILIP1Q7Z7B0 1213 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 CCDC150Q8NCX0 1101 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 GPT2Q8TD30 523 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 PLEKHO2Q8TD55 490 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 ZNF516Q92618 1163 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 EEF2KMTQ96G04 330 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 IMPG2Q9BZV3 1241 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 GZF1Q9H116 711 aaPredicted RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 ARMCX3Q9UH62 379 aaPredicted RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 AFF4Q9UHB7 1163 aaKnown RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 RWDD2AQ9UIY3 292 aa15.26■□□□□ 0.03
BRCA1-211ENST00000472490 USP15Q9Y4E8 981 aaPredicted RBP15.26■□□□□ 0.03
BRCA1-211ENST00000472490 CCDC195A0A1B0GUA6 201 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 PRRG1O14668 218 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 ADAM12O43184 909 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 ZMYND10O75800 440 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 ABLIM3O94929 683 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 CST3P01034 146 aaPredicted RBP15.25■□□□□ 0.03
BRCA1-211ENST00000472490 C8AP07357 584 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 SPATA31D3P0C874 917 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 MYL7Q01449 175 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 CBX2Q14781 532 aaPredicted RBP15.25■□□□□ 0.03
BRCA1-211ENST00000472490 SGSM1Q2NKQ1 1148 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 WDR72Q3MJ13 1102 aa15.25■□□□□ 0.03
BRCA1-211ENST00000472490 CT47A1Q5JQC4 288 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms