RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ENO3P13929 434 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 RRM2P31350 389 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 CHRNDQ07001 517 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 NSUN2Q08J23 767 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ZYXQ15942 572 aaKnown RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 NUDT18Q6ZVK8 323 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 PTPRN2Q92932 1015 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 SAR1AQ9NR31 198 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 STIP1P31948 543 aaKnown RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 RINLQ6ZS11 566 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 CDH24Q86UP0 819 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ELMOD1Q8N336 334 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 USP38Q8NB14 1042 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ACSBG1Q96GR2 724 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 AGPAT1Q99943 283 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 BIRC5O15392 142 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 CDH6P55285 790 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 NAA20P61599 178 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ATP8B4Q8TF62 1192 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 RAD54BQ9Y620 910 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ZC3H13Q5T200 1668 aaKnown RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 IL6P05231 212 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 MTA1Q13330 715 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 AGAP9Q5VTM2 703 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 OR6P1Q8NGX9 317 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 PGBD4Q96DM1 585 aa13.89□□□□□ -0.19
COL6A3-209ENST00000472056 ZCCHC17Q9NP64 241 aaKnown RBP13.89□□□□□ -0.19
COL6A3-209ENST00000472056 CCDC88AQ3V6T2 1871 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ASNSP08243 561 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CHRNB3Q05901 458 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 FGD2Q7Z6J4 655 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ZNF589Q86UQ0 364 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 FOXP4Q8IVH2 680 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 E2F7Q96AV8 911 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 C18orf8Q96DM3 657 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 MCRS1Q96EZ8 462 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CHAMP1Q96JM3 812 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 HERC5Q9UII4 1024 aaKnown RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 PDS5AQ29RF7 1337 aaKnown RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CNOT3O75175 753 aaKnown RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 GPC3P51654 580 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 E4F1Q66K89 784 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 GRAMD1CQ8IYS0 662 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 TAB3Q8N5C8 712 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ECSITQ9BQ95 431 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 UBXN8O00124 270 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 HIST1H2AGP0C0S8 130 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 FAM58BPP0C7Q3 252 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 HIST1H2ADP20671 130 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ACADSBP45954 432 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 PLOD1Q02809 727 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ARMC4Q5T2S8 1044 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CACHD1Q5VU97 1274 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 HIST1H2AHQ96KK5 128 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 HIST1H2AJQ99878 128 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 H2AFJQ9BTM1 129 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ARIH1Q9Y4X5 557 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 RAB15P59190 212 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 TRIQKQ629K1 86 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 PLEKHA7Q6IQ23 1121 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 TRIM65Q6PJ69 517 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 KSR1Q8IVT5 923 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 ASZ1Q8WWH4 475 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 EXT2Q93063 718 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 RHBDL2Q9NX52 303 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 NRKQ7Z2Y5 1582 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 RGS5O15539 181 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 STXBP2Q15833 593 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CDO1Q16878 200 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 C6orf10Q5SRN2 563 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 C3orf62Q6ZUJ4 267 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 KLHL3Q9UH77 587 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 SLC24A2Q9UI40 661 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CFAP99D6REC4 459 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 PTPN4P29074 926 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 LRRC41Q15345 812 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 S100ZQ8WXG8 99 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 TRIM66O15016 1216 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 H2AFXP16104 143 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-209ENST00000472056 CD58P19256 250 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 BTN2A2Q8WVV5 523 aa13.88□□□□□ -0.19
COL6A3-209ENST00000472056 PALLDQ8WX93 1383 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 TSNQ15631 228 aaKnown RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 SDE2Q6IQ49 451 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 GPIHBP1Q8IV16 184 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 APPL2Q8NEU8 664 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 ULK2Q8IYT8 1036 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 GLMNQ92990 594 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 PI4K2BG5E9Z4 385 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 CAND2O75155 1236 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 BCAMP50895 628 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 MMRN1Q13201 1228 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 CABLES1Q8TDN4 633 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 TTC7AQ9ULT0 858 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 G3BP2Q9UN86 482 aaKnown RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 KCNN4O15554 427 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 STX11O75558 287 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 CD2BP2O95400 341 aaKnown RBP13.87□□□□□ -0.19
COL6A3-209ENST00000472056 CCZ1BP86790 482 aa13.87□□□□□ -0.19
COL6A3-209ENST00000472056 CCZ1P86791 482 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms