RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 METTL23Q86XA0 190 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 KREMEN2Q8NCW0 462 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 CMASQ8NFW8 434 aaPredicted RBP16.46■□□□□ 0.23
SDC3-203ENST00000471567 GPT2Q8TD30 523 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 HPDLQ96IR7 371 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 FAM84AQ96KN4 292 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 ADAM7Q9H2U9 754 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 SFXN1Q9H9B4 322 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 MAN1C1Q9NR34 630 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 FBXW11Q9UKB1 542 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 TIMM13Q9Y5L4 95 aaPredicted RBP16.46■□□□□ 0.23
SDC3-203ENST00000471567 OR6C75A6NL08 312 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 SLC16A3O15427 465 aaKnown RBP16.45■□□□□ 0.22
SDC3-203ENST00000471567 PAPLNO95428 1278 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 MBD3O95983 291 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 C4BPAP04003 597 aaKnown RBP16.45■□□□□ 0.22
SDC3-203ENST00000471567 EPB41P11171 864 aaKnown RBP16.45■□□□□ 0.22
SDC3-203ENST00000471567 BFSP1Q12934 665 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 SMAD2Q15796 467 aaKnown RBP16.45■□□□□ 0.22
SDC3-203ENST00000471567 TPGS2Q68CL5 300 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 CES5AQ6NT32 575 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 CYP26C1Q6V0L0 522 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 DPH6Q7L8W6 267 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 ZNF461Q8TAF7 563 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 SPATA18Q8TC71 538 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 NELFBQ8WX92 580 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 SUSD6Q92537 303 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 CEP63Q96MT8 703 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 RHOBTB2Q9BYZ6 727 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 ZDHHC7Q9NXF8 308 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 MAFFQ9ULX9 164 aa16.45■□□□□ 0.22
SDC3-203ENST00000471567 TRIM49BA6NDI0 452 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 SPDYE4A6NLX3 237 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 HUS1O60921 280 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 PHACTR2O75167 634 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 ABLIM3O94929 683 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 STAU1O95793 577 aaKnown RBP16.44■□□□□ 0.22
SDC3-203ENST00000471567 CST3P01034 146 aaPredicted RBP16.44■□□□□ 0.22
SDC3-203ENST00000471567 ATICP31939 592 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 DLG4P78352 724 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 ROR1Q01973 937 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 TRPC3Q13507 836 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 UVSSAQ2YD98 709 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 ZACNQ401N2 412 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 SCARA3Q6AZY7 606 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 KLHL10Q6JEL2 608 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 TTI2Q6NXR4 508 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 THEM5Q8N1Q8 247 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 TMEM86AQ8N2M4 240 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 TOP6BLQ8N6T0 577 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 MLKLQ8NB16 471 aa16.44■□□□□ 0.22
SDC3-203ENST00000471567 USP15Q9Y4E8 981 aaPredicted RBP16.44■□□□□ 0.22
SDC3-203ENST00000471567 WDR27A2RRH5 827 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 ZMYND10O75800 440 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 FAM163BP0C2L3 166 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 SPATA31D3P0C874 917 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 IL9P15248 144 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 HOXA9P31269 272 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 GTF2H1P32780 548 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 MTHFRP42898 656 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 PAK1Q13153 545 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 BIRC3Q13489 604 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 ATAT1Q5SQI0 421 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 C1orf220Q5T0J3 134 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 RARS2Q5T160 578 aaKnown RBP16.43■□□□□ 0.22
SDC3-203ENST00000471567 LIN9Q5TKA1 542 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 TDRD10Q5VZ19 366 aaKnown RBP16.43■□□□□ 0.22
SDC3-203ENST00000471567 WSCD1Q658N2 575 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 C15orf39Q6ZRI6 1047 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 SPATA31D4Q6ZUB0 917 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 CCDC149Q6ZUS6 474 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 SV2AQ7L0J3 742 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 LIMS2Q7Z4I7 341 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 FILIP1Q7Z7B0 1213 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 GPR149Q86SP6 731 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 C12orf76Q8N812 135 aaPredicted RBP16.43■□□□□ 0.22
SDC3-203ENST00000471567 SYAP1Q96A49 352 aaPredicted RBP16.43■□□□□ 0.22
SDC3-203ENST00000471567 RIPOR3Q96MK2 946 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 NECTIN4Q96NY8 510 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 DUSP9Q99956 384 aaKnown RBP16.43■□□□□ 0.22
SDC3-203ENST00000471567 VRTNQ9H8Y1 702 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 PRKAG3Q9UGI9 489 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 SNX9Q9Y5X1 595 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 PLXNA3P51805 1871 aa16.43■□□□□ 0.22
SDC3-203ENST00000471567 MTCL1Q9Y4B5 1905 aaKnown RBP16.43■□□□□ 0.22
SDC3-203ENST00000471567 STX10O60499 249 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 HNRNPA1P09651 372 aaKnown RBP eCLIP16.42■□□□□ 0.22
SDC3-203ENST00000471567 ATF2P15336 505 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 ELF1P32519 619 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 ARPP19P56211 112 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 MYL6P60660 151 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 GPR17Q13304 367 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 NCOA4Q13772 614 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 CBX2Q14781 532 aaPredicted RBP16.42■□□□□ 0.22
SDC3-203ENST00000471567 PDCL2Q8N4E4 241 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 EEF2KMTQ96G04 330 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 APOL5Q9BWW9 433 aa16.42■□□□□ 0.22
SDC3-203ENST00000471567 METTL14Q9HCE5 456 aaKnown RBP16.42■□□□□ 0.22
SDC3-203ENST00000471567 AFF4Q9UHB7 1163 aaKnown RBP16.42■□□□□ 0.22
SDC3-203ENST00000471567 L1RE1Q9UN81 338 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms