RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 ACCSQ96QU6 501 aa12.96□□□□□ -0.33
PTPRF-211ENST00000467464 MRPL44Q9H9J2 332 aaKnown RBP12.96□□□□□ -0.33
PTPRF-211ENST00000467464 MYO10Q9HD67 2058 aa12.96□□□□□ -0.33
PTPRF-211ENST00000467464 TSC2P49815 1807 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 PRR23AA6NEV1 266 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 SPTLC2O15270 562 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 GFRA3O60609 400 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 PPP6R2O75170 966 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 GCNT3O95395 438 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 YEATS4O95619 227 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 ODC1P11926 461 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 GJA1P17302 382 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 SNW1Q13573 536 aaKnown RBP12.95□□□□□ -0.34
PTPRF-211ENST00000467464 POSTNQ15063 836 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 MLF2Q15773 248 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-211ENST00000467464 FAM78AQ5JUQ0 283 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 SHC4Q6S5L8 630 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 PDZD4Q76G19 769 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-211ENST00000467464 FRMD5Q7Z6J6 570 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 USP37Q86T82 979 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 BRSK2Q8IWQ3 736 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 PDILTQ8N807 584 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 SHKBP1Q8TBC3 707 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 CBWD1Q9BRT8 395 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 TRPV4Q9HBA0 871 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 ZNF334Q9HCZ1 680 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-211ENST00000467464 KBTBD4Q9NVX7 518 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 DPP3Q9NY33 737 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 TFIP11Q9UBB9 837 aaKnown RBP12.95□□□□□ -0.34
PTPRF-211ENST00000467464 MTF2Q9Y483 593 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-211ENST00000467464 CACNA1HO95180 2353 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 CITO14578 2027 aa12.95□□□□□ -0.34
PTPRF-211ENST00000467464 KANSL1LA0AUZ9 987 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 ZNF197O14709 1029 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 SOAT2O75908 522 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 IL18RAPO95256 599 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 IDEP14735 1019 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 GARTP22102 1010 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 HOXD13P35453 343 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 PRKCQQ04759 706 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 DUSP4Q13115 394 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 ALCAMQ13740 583 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 STK38Q15208 465 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 SLC44A4Q53GD3 710 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 CNNM4Q6P4Q7 775 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 VITQ6UXI7 678 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 MAML2Q8IZL2 1156 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-211ENST00000467464 ZNF687Q8N1G0 1237 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 C1orf127Q8N9H9 656 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 LEMD2Q8NC56 503 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 HPS3Q969F9 1004 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 RSPRY1Q96DX4 576 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 SAAL1Q96ER3 474 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 ZNF512Q96ME7 567 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-211ENST00000467464 FAM213AQ9BRX8 229 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 MKNK1Q9BUB5 465 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 TRIM9Q9C026 710 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 ZCWPW1Q9H0M4 648 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 ASAH2Q9NR71 780 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 PANK4Q9NVE7 773 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 HSFX1Q9UBD0 423 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 EXOC7Q9UPT5 735 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 SIT1Q9Y3P8 196 aa12.94□□□□□ -0.34
PTPRF-211ENST00000467464 DOCK6Q96HP0 2047 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 STK25O00506 426 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 CYB561D2O14569 222 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 PRPF6O94906 941 aaKnown RBP12.93□□□□□ -0.34
PTPRF-211ENST00000467464 MYL4P12829 197 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 TAF6P49848 677 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 PFKPQ01813 784 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 EHHADHQ08426 723 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 FZD5Q13467 585 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 PKP1Q13835 747 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 GRM2Q14416 872 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 TEAD2Q15562 447 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 WSCD1Q658N2 575 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 EPM2AIP1Q7L775 607 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-211ENST00000467464 LRRTM3Q86VH5 581 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 NT5DC4Q86YG4 428 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 ELMOD1Q8N336 334 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 SMARCD2Q92925 531 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 PYM1Q9BRP8 204 aaKnown RBP12.93□□□□□ -0.34
PTPRF-211ENST00000467464 TNMDQ9H2S6 317 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 LTB4R2Q9NPC1 389 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 SIX4Q9UIU6 781 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 DSEQ9UL01 958 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 SLC27A5Q9Y2P5 690 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 PCDHB13Q9Y5F0 798 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 COL4A2P08572 1712 aa12.93□□□□□ -0.34
PTPRF-211ENST00000467464 MYH11P35749 1972 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 PTPRJQ12913 1337 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 A0A1W2PRU2 124 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 GOLGA8IPA6NC78 632 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 GOLGA8JA6NMD2 632 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 ARNTLO00327 626 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 EXTL3O43909 919 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 CUTAO60888 179 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 ZSCAN22P10073 491 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-211ENST00000467464 ATF6P18850 670 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 CD72P21854 359 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms